Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 20,141,451 – 20,141,554 |
Length | 103 |
Max. P | 0.665995 |
Location | 20,141,451 – 20,141,554 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 79.55 |
Mean single sequence MFE | -29.63 |
Consensus MFE | -19.47 |
Energy contribution | -18.52 |
Covariance contribution | -0.94 |
Combinations/Pair | 1.36 |
Mean z-score | -1.47 |
Structure conservation index | 0.66 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.665995 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20141451 103 + 20766785 -----CAUCUAUUGAUGGCCAUGGUGACGGUGGUCAAGUCCGGAGCACGCCUAUGGUCAUUAGGCUAAGACCCCAGGGCCGUAAAAUGGCGAAGGCAAUUACCAGAUA -----.((((....((((((..(....)((.((((..((.....))..(((((.......)))))...))))))..))))))......((....)).......)))). ( -33.40) >DroPse_CAF1 25570 100 + 1 -------UCAUUUGACGACCCUGGAGCUU-GGGUCAAAUCCUGGACACGCCUAUGGUCAUUAAGCUGGCACCCGAAAGCAAUAAAAAAGCAAAGGCAAUUACCAGAUA -------.........(((((........-))))).....((((....((((.((((((......))))...(....)...........)).)))).....))))... ( -24.70) >DroSec_CAF1 26005 103 + 1 -----CAUCUAUUGAUGGCCGUGGUGACGGUGGUCAAGUCCGGAGCACGCCUAUGGUCAUUAGGCUAAGACCCCAGGGCCGUAAAAAGGCGAAGGCAAUUACCAGAUA -----.((((....((((((.(((.(...(((.((.......)).)))(((((.......))))).....).))).))))))......((....)).......)))). ( -33.60) >DroEre_CAF1 28370 102 + 1 -----CAUCUAUUGAUGGCCAUGGUGACGGUGGUCAAGUCCGGAGCACGCCUAUGGUCAUUAGGCUAAGACCCUGGGGCCGUAAAAAGGC-AAGGCAAUUACCAGAUA -----.((((..((((((((((((.(...(((.((.......)).))).)))))))))))))((.(((...(((...(((.......)))-.)))...))))))))). ( -34.10) >DroAna_CAF1 29509 100 + 1 UGCCUCAUCAGUUGAUGACCGUGG------CGGUCAAAUCCGGAGCACGCCUAUGGUCAUUAAGCUGGCACC-CAAAGCAAUAAAAAAGCAA-AGCAAUUACCAGAUA (((....(((((((((((((((((------(((((.......)).).)))).))))))))).))))))....-....((.........))..-.)))........... ( -27.30) >DroPer_CAF1 25563 100 + 1 -------UCAUUUGACGACCCUGGAGCUU-GGGUCAAAUCCUGGACACGCCUAUGGUCAUUAAGCUGGCACCCGAAAGCAAUAAAAAAGCAAAGGCAAUUACCAGAUA -------.........(((((........-))))).....((((....((((.((((((......))))...(....)...........)).)))).....))))... ( -24.70) >consensus _____CAUCAAUUGAUGACCAUGGUGACG_UGGUCAAAUCCGGAGCACGCCUAUGGUCAUUAAGCUAACACCCCAAAGCAAUAAAAAAGCAAAGGCAAUUACCAGAUA ...........(((((((((((((......(((......)))........)))))))))))))(((..(....)..))).........((....))............ (-19.47 = -18.52 + -0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:19 2006