Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 20,138,226 – 20,138,325 |
Length | 99 |
Max. P | 0.819843 |
Location | 20,138,226 – 20,138,325 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 87.95 |
Mean single sequence MFE | -26.69 |
Consensus MFE | -17.95 |
Energy contribution | -17.59 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.19 |
Mean z-score | -2.70 |
Structure conservation index | 0.67 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.819843 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20138226 99 + 20766785 AUUGGAGUUAUCUGUUCGAAUUAAUCCGUUUUGUGUGUG--------GCCAUCUUGCUACCAUCUAAUGGAAUAUUUCGAUUAGGAUCUAUUUAUAUAUCUCAGUUA ..((((....((((.(((((.((.((((((..(((.(((--------((......))))))))..)))))).)).))))).)))).))))................. ( -26.50) >DroSec_CAF1 22778 97 + 1 AUUGGAGUUAUCUGUUCGGAUUAAUCCGUUUUGUGUGUG--------GCCAUCCUGCUACCAUCUAAUGGAAUAUUUCGAUUAGGAUCUAUUUAU--AUCUCAGUUA ..((((....((((.(((((.((.((((((..(((.(((--------((......))))))))..)))))).)).))))).)))).)))).....--.......... ( -26.00) >DroSim_CAF1 23629 97 + 1 AUUGGAGUUAUCUGUUCGGAUUAAUCCGUUUUGUGUGUG--------GCCAUCUUGCUACCAUCUAAUGGAAUAUUUCGAUUAGGAUCUAUUUAU--AUCUCAGUUA ..((((....((((.(((((.((.((((((..(((.(((--------((......))))))))..)))))).)).))))).)))).)))).....--.......... ( -26.00) >DroEre_CAF1 25260 100 + 1 AUUGGAGUUAUCUGUUCGGAUUAAUCCAUUUUGUGUGCGUG-----UGGCAUCUUGCUGCCAUCUAAUGGAA--UUUCGAUUAGGAUCUAUAAAUAGGUCGCAGUUA ..((((...((((....))))...)))).......(((..(-----(((((......))))))(((((.(..--...).)))))((((((....))))))))).... ( -27.10) >DroYak_CAF1 23410 107 + 1 AUUGGAGUUAUCUCUUUGGAUUAAUCCAUUUUGUGUGUGUGUGUGGUGGCAUCUUGCUGCCAUUUAAUGGAAUAUUUCGAUUAGGAUCUAUAAAUAGGUCUCAGUUA ...((((....))))..(((.((.((((((............((((..((.....))..))))..)))))).)).)))((((..((((((....))))))..)))). ( -27.84) >consensus AUUGGAGUUAUCUGUUCGGAUUAAUCCGUUUUGUGUGUG________GCCAUCUUGCUACCAUCUAAUGGAAUAUUUCGAUUAGGAUCUAUUUAUA_AUCUCAGUUA ..((((....((((.(((((.((.((((((..(((.(((..................))))))..)))))).)).))))).)))).))))................. (-17.95 = -17.59 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:18 2006