Locus 6449

Sequence ID 2R_DroMel_CAF1
Location 20,129,642 – 20,129,744
Length 102
Max. P 0.959377
window10287

overview

Window 7

Location 20,129,642 – 20,129,744
Length 102
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 77.21
Mean single sequence MFE -27.02
Consensus MFE -10.24
Energy contribution -10.16
Covariance contribution -0.08
Combinations/Pair 1.22
Mean z-score -2.36
Structure conservation index 0.38
SVM decision value 1.50
SVM RNA-class probability 0.959377
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20129642 102 - 20766785
-----CGAAGU---------GUUGCAGACGUGGUGAAUUAUCGCUUUUAUCGAUCGAUUUGCCUUUGUUAUCGCUCGGAUUCAAACGCUUUUGUGAUGCUUCUUUUCAUAUCUUUU
-----.(((((---------((..((((.(((((((....)))).....((((.((((..((....)).)))).)))).......))).))))..))))))).............. ( -27.30)
>DroSec_CAF1 14000 102 - 1
-----CGAAGU---------GUUGCACGCGCAGUGAUUUAUCGCGUUUAUCGAUCGAUUUGCCUUUGUUAUCGGUCGGAUUUAAGCGCUUUUGUGAUGCUUCUUUUCAUAUCUUUU
-----.(((((---------((..((.((((.((((....)))).....(((((((((..((....)).)))))))))......))))...))..))))))).............. ( -33.20)
>DroSim_CAF1 15002 102 - 1
-----CGAAGU---------GUUGCACACGCAGUGAUUUAUCGCUUUUAUCGAUCGAUUUGCCUUUGUUAUCGGUCGGAUUUAAGCGCUUUUGUGAUGCUUCUUUUCAUAUCUUUU
-----.(((((---------((..((..((((((((....)))))....(((((((((..((....)).)))))))))......)))....))..))))))).............. ( -29.60)
>DroEre_CAF1 14288 115 - 1
G-GAGCAAAGAGUUGCAGCCACUGCAGCCACAGUGUUUUAUCGCUUUUAUCGAUCGAAUUGCCUUUGUUAUCGCUCGAUUUGAAUACAUUUUGUGGGUCCACCUUUUAUAUCUUUC
(-((.(.....(((((((...)))))))(((((((......)))((..(((((.(((...((....))..))).)))))..))........))))).)))................ ( -26.20)
>DroYak_CAF1 14291 107 - 1
GGGAACGAAGA---------ACUGCAAGCACCGUGAUUUAUCGCUUUUAUCGAUCGAAUUGCCUUUGUUAUCGCUUGAUUUCAAUGAAUUCUAUGGUUCCACUUUUUAUAUCUUUC
.(((((.((((---------(.....((((..(..((((((((.......)))).))))..)...)))).(((.(((....)))))).)))).).)))))................ ( -18.80)
>consensus
_____CGAAGU_________GUUGCACACGCAGUGAUUUAUCGCUUUUAUCGAUCGAUUUGCCUUUGUUAUCGCUCGGAUUCAAGCGCUUUUGUGAUGCUUCUUUUCAUAUCUUUU
......(((((.........((((((......(((......))).....((((.(((...((....))..))).)))).............))))))))))).............. (-10.24 = -10.16 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:17 2006