Locus 6443

Sequence ID 2R_DroMel_CAF1
Location 20,115,286 – 20,115,406
Length 120
Max. P 0.869552
window10279

overview

Window 9

Location 20,115,286 – 20,115,406
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 87.91
Mean single sequence MFE -36.23
Consensus MFE -30.42
Energy contribution -30.43
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.87
Structure conservation index 0.84
SVM decision value 0.86
SVM RNA-class probability 0.869552
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20115286 120 - 20766785
AGAUCUUCUCCAUACUUGGUGGGUUGUAGGUGAUACUUUGGCCUCUUGGAUUCGGACUUGCUGAUUUCGGCAGCAGUGAUUCAGUUGGCUGGAGCUGGUCUUUCUGGAACUUUUCACUAU
................(((((((((.((((.(((.(((..(((..(((((((...((((((((....)))))..))))))))))..)))..)))...)))..)))).))))...))))). ( -36.10)
>DroSec_CAF1 41 120 - 1
AGAUCUUCUCCAUACUUGGUGGGUUGUAGGUGAUACUUUGGCCUCUGGGAUUCGGGCUUGCUGAUUUCGGCAGCAAUGAUUCAGUUGGCUGGAGCUGGUCUUUCUGGAACUUUUCACUAU
................(((((((((.((((.(((.(((..(((....(((((...(((.((((....)))))))...)))))....)))..)))...)))..)))).))))...))))). ( -37.60)
>DroSim_CAF1 1 103 - 1
AGAUCUUCUCCAUACUUGGUGGGUUGUAGGUGAUACUUUGGCCUCUGGGAUUCGGGCUUGCUGAUUUCGGCAGCAAUGAUUCAGUUGGCUGGAGCUGGUCUUU-----------------
(((((..((((...((..(.((((((.((......)).)))))))..)).....((((.(((((..(((.......))).))))).))))))))..)))))..----------------- ( -33.70)
>DroYak_CAF1 1 103 - 1
AGAUCUUCUCCAUACUUGGUGGGUUGUAGGUGAUACUUUGGCCUCUUGGAUUCGGAGUUGCUGAUUUCGGCAGCGAUGAUUCAGUUGGCUGGAGCUGGUCUUU-----------------
(((((..((((.((((((........)))))).......((((..((((((.((..(((((((....)))))))..))))))))..))))))))..)))))..----------------- ( -37.50)
>consensus
AGAUCUUCUCCAUACUUGGUGGGUUGUAGGUGAUACUUUGGCCUCUGGGAUUCGGACUUGCUGAUUUCGGCAGCAAUGAUUCAGUUGGCUGGAGCUGGUCUUU_________________
(((((..((((.((((((........)))))).......((((.....((.(((...((((((....))))))...))).))....))))))))..)))))................... (-30.42 = -30.43 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:09 2006