Locus 6442

Sequence ID 2R_DroMel_CAF1
Location 20,113,296 – 20,113,416
Length 120
Max. P 0.509620
window10278

overview

Window 8

Location 20,113,296 – 20,113,416
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.22
Mean single sequence MFE -44.43
Consensus MFE -25.48
Energy contribution -25.87
Covariance contribution 0.39
Combinations/Pair 1.19
Mean z-score -1.61
Structure conservation index 0.57
SVM decision value -0.05
SVM RNA-class probability 0.509620
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20113296 120 + 20766785
ACCAAGACGUGCUCGGCCAAAGCCUUGCGCAGGUGGAACUUUCUCCCGCAGCAUUCGAUGUAGCCAGAUUCGAUGUUGUGGGAAACGCGUUGAUGGCGUCGCAUGUCCGCAAAGUUCUGC
........((((..(((....)))..))))..(..(((((((.(((((((((((.(((...........)))))))))))))).((((.......)))).((......)))))))))..) ( -44.30)
>DroVir_CAF1 2058 120 + 1
ACCAGCACAUGCUCAGCCAGAGCCCGGCGUAUGUGAAACUUGCGACCACAGCAGGCUAUGAAGCCGCUCUCAAUGUUGUGGGACAUGCGCUGAUGGCGACGCAUGUCGCCGAAGUUGGGC
.(((((....((((.....)))).((((((((((....((..((((...(((.((((....)))))))......))))..)))))))))))).(((((((....)))))))..))))).. ( -52.60)
>DroGri_CAF1 2077 120 + 1
ACCAGCACAUGCUCGGCCAGACCCCUGCGUAUGUGAAACUUGCGACCACAGCAGGCAAUGAAGCCACUUUCGAUGUUGUGGGACAUGCGCAGAUGACGACGCAUGUCUCCGAAAUUGGGC
.(((((((((((.(((........))).))))))).......((.(((((((((((......))).(....).))))))))((((((((..(....)..))))))))..))...)))).. ( -42.50)
>DroWil_CAF1 2127 120 + 1
ACUAGCACAUGCUCGGCCAGCGCCUUGCGUAUGUGAAAUUUGCGUCCACAGCAAUUGAUGUAGCCCGAUUCAAUGUUGUGCGACAUGCGCUGAUGGCGUCGCAUGUCUGCAAAAUUCUGU
....(((.((((..(((....)))..)))).)))(((.(((((...(((((((.((((...........))))))))))).((((((((.((....)).)))))))).))))).)))... ( -41.00)
>DroMoj_CAF1 2059 120 + 1
ACCAGCACAUGCUCGGCCAGUGCGCGACGCAUGUGAAACUUACGACCGCAGCAGGUGAUGAAGCCACUCUCCAUGUUGUGGGACAUGCGCUGAUGGCGCCGCAUGUCUCCGAAGUUGGGC
.((..((((((((((((....)).))).))))))).(((((.((.((((((((((.((((....)).)).)).))))))))((((((((.((....)).))))))))..))))))))).. ( -50.90)
>DroAna_CAF1 6190 120 + 1
ACCAGCACAUGUUCCGCCAGCCCCUUGCGAAUGUGGUACUUUCUCCCGCAGCACUCGAUAUAUCCCGAAUCGAUGUCGUGGGACAUGCGCUGAUGCCGUCGCAUGUCUGCAAAGUUCUGC
..((((.((((((((((..((.....))...(((((.........)))))(((.(((((.........)))))))).)))))))))).))))((((....))))....(((......))) ( -35.30)
>consensus
ACCAGCACAUGCUCGGCCAGAGCCCUGCGUAUGUGAAACUUGCGACCACAGCAGGCGAUGAAGCCACAUUCGAUGUUGUGGGACAUGCGCUGAUGGCGUCGCAUGUCUCCAAAGUUCGGC
.....(((((((................))))))).(((((....((((((((......((......))....))))))))((((((((.((....)).))))))))....))))).... (-25.48 = -25.87 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:08 2006