Locus 6436

Sequence ID 2R_DroMel_CAF1
Location 20,099,538 – 20,099,635
Length 97
Max. P 0.528675
window10267

overview

Window 7

Location 20,099,538 – 20,099,635
Length 97
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 84.30
Mean single sequence MFE -39.48
Consensus MFE -30.42
Energy contribution -30.98
Covariance contribution 0.56
Combinations/Pair 1.20
Mean z-score -1.64
Structure conservation index 0.77
SVM decision value -0.01
SVM RNA-class probability 0.528675
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20099538 97 - 20766785
UCGGCUCCACCGCCGGCUUAGAGGUGGAGGCCACCUCCGCCUCCGCCGCCGCAAUCGCAUCGCUCAGCGAGCUCUGGGCAUCUUCUGCAAGGGAAAU--
.((((......))))((..((((((((((((.......)))))))))(((.((...((.((((...))))))..))))).)))...)).........-- ( -40.60)
>DroSec_CAF1 1 82 - 1
UCGGCUCCACCGCCGGCUUAGAGGUGGAGGCCACCUCCGCCUCCGCAGCCGCAAUCGCCUCGCUCAGCGAGCUCUGGGCAUC-----------------
..(((......)))((((..((((((((((...))))))))))...))))......((((.((((...))))...))))...----------------- ( -39.20)
>DroSim_CAF1 1339 97 - 1
UCGGCUCCACCGCCGGCUUAGAGGUGGAGGCCACCUCCGCCUCCGCCGCCGCAAUCGCCUCGCUCAGCGAGCUCUGGGCAUCUUCUGCAAGGGAAAU--
.((((......))))((..((((((((((((.......)))))))))(((.((...((.((((...))))))..))))).)))...)).........-- ( -40.60)
>DroEre_CAF1 2226 97 - 1
UCGGCUCCACCGCCGGCUUAGAGGUGGAGGCCACCUCCGCCUCCGCCGCUGCAAUCGCCUCGCUCAGCGAGCUCUGGGCAUCCUCUGCAAGGGAAAU--
.((((......))))((((((((((((((((.......))))))))).........((.((((...))))))))))))).((((......))))...-- ( -43.00)
>DroYak_CAF1 2278 97 - 1
UCGGCUCCACCGCCGGCUUGGAGGUGGAGGCCACCUCCGCCUCCGCCGCUGCAAUCGCCUCGCUCAGCGAGCUCUGCGCAUCCUCUGCAAGGGAAAU--
..(((......)))(((..(((((((((((...))))))))))))))((.(((...((.((((...))))))..))))).((((......))))...-- ( -44.90)
>DroAna_CAF1 2276 99 - 1
UCGGCUCGAUGAUAGCCUUCAGUGUGGGCGUGGCCUCCGCCUCCGCCGCUUCAAUGGCCUCACUCAGCGAGCUCUGGGCAUCCUCUGCGAAAGAAAAAA
...(((((.(((..(((......((((.((.(((....)))..))))))......))).....))).)))))(((..(((.....)))...)))..... ( -28.60)
>consensus
UCGGCUCCACCGCCGGCUUAGAGGUGGAGGCCACCUCCGCCUCCGCCGCCGCAAUCGCCUCGCUCAGCGAGCUCUGGGCAUCCUCUGCAAGGGAAAU__
..(((.....((.((((...((((((((((...)))))))))).)))).)).....)))..((((((......)))))).................... (-30.42 = -30.98 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:58 2006