Locus 6432

Sequence ID 2R_DroMel_CAF1
Location 20,086,188 – 20,086,308
Length 120
Max. P 0.598802
window10260

overview

Window 0

Location 20,086,188 – 20,086,308
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 82.17
Mean single sequence MFE -49.40
Consensus MFE -30.84
Energy contribution -30.71
Covariance contribution -0.13
Combinations/Pair 1.47
Mean z-score -1.94
Structure conservation index 0.62
SVM decision value 0.13
SVM RNA-class probability 0.598802
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20086188 120 + 20766785
AGUUCCUGGCGGGCAGCGUCUGCAUCCUCCUGGACGCGGGACAGUCGGUUCUCCAGGUUUAUGUUCGUCUGCCUGGAAACCUUGGCAUCCCGCUUCAGCACCUCCAGCUCCCGCUGCUGG
....((.((((((.(((...(((.(((....))).((((((..(((((((.(((((((..((....))..)))))))))))..))).))))))....)))......)))))))))...)) ( -50.20)
>DroGri_CAF1 583 120 + 1
AGCAACUGGCGUGCCGCCUCUGCCUCGUCAUUGGCGCGUAAUAAUCGCUUCUCCAGAUUCGCAUUGGUCUGCUUGAGUACUUUUGCAUCGCGUCUGAGAAGCUCCAGUUCUUGCUUCUGU
(((((((((..(((((((..((......))..)))).)))......(((((((.((((.((((..(((((.....)).)))..)))...).))))))))))).)))))...))))..... ( -37.00)
>DroSec_CAF1 521 120 + 1
AGUUCCUGGCGGGCAGCGUCUGCAUCCUCCUGGACGCGGGACAGUCGGUUCUCCAGGUUUAUAUUCGUCUGCCUGGAAACCUUGGCAUCCCGCUUCAGCAGCUCCAGCUCCCGCUGCUGG
....((.((((((.(((..((((.(((....))).((((((..(((((((.(((((((..((....))..)))))))))))..))).))))))....)))).....)))))))))...)) ( -52.30)
>DroEre_CAF1 516 120 + 1
AGUUCCUGGCGGGCCGCGUCGGCAUCCUCCUGGACGCGUGACAGUCGGUUCUCCAGGUUAAUGGUCGUCUGCCUGGAAACCUUGGCAUCACGCUUCAGCUGCUCCAGCUCCCGCUGCUGG
.......(((((((((...))))......(((((.((((((..(((((((.(((((((..((....))..)))))))))))..))).))))))))))))))))(((((.......))))) ( -49.40)
>DroYak_CAF1 525 120 + 1
AGCUCCUGGCGGGCCACGUCUGCGUCCUCCUGGACGCGCGACAGUCGGUUCUCCAGGUUAAUGGUCGUCUGCCUGGAGACCUUGGCAUCCCGCUUCAGCUGCUCCAGCUCCCGCUGCUGG
((((...(((((((((.((((((((((....))))))).)))....(((.((((((((..((....))..))))))))))).))))...)))))..))))...(((((.......))))) ( -59.60)
>DroAna_CAF1 446 120 + 1
AGAGUCUUGCGGGCGACUUCGGCCUCCUCUUGGGCGCGGGACAGACGGUUCUCCAGAUUGAUGUUCGUCUGCCUGGCCACCUUGGCAUCGCGCUUAAGCUGCUCCAGCUCCCGUUGCUGG
.((((...((((.((....)).)).....(((((((((((.(((((((.((........))...)))))))))..(((.....)))..))))))))))).))))((((.......)))). ( -47.90)
>consensus
AGUUCCUGGCGGGCCGCGUCUGCAUCCUCCUGGACGCGGGACAGUCGGUUCUCCAGGUUAAUGUUCGUCUGCCUGGAAACCUUGGCAUCCCGCUUCAGCAGCUCCAGCUCCCGCUGCUGG
....((.((((((......((((.(((....))).((((((.....((((.(((((((..((....))..)))))))))))......))))))....))))........))))))...)) (-30.84 = -30.71 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:52 2006