Locus 6431

Sequence ID 2R_DroMel_CAF1
Location 20,080,657 – 20,080,767
Length 110
Max. P 0.686689
window10259

overview

Window 9

Location 20,080,657 – 20,080,767
Length 110
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 83.73
Mean single sequence MFE -28.83
Consensus MFE -24.93
Energy contribution -24.35
Covariance contribution -0.58
Combinations/Pair 1.18
Mean z-score -1.57
Structure conservation index 0.86
SVM decision value 0.32
SVM RNA-class probability 0.686689
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20080657 110 - 20766785
UUUAAACCAAUAAAUAAUAACUAUU--UUAUUCUAGUUUACCUUCUGCCAAACUCCAUGUUGGGCAGGGCGUGCUUCGUCUGCUGCAUUUGGGUGUAUGUAGAUAGAGCUUC
..................(((((..--......))))).((.(((((((.(((.....))).))))))).))((((..((((((((((....))))).)))))..))))... ( -30.20)
>DroVir_CAF1 3866 106 - 1
UUUAGUU-GAA---GUA--GUUACAAAUAAGGAGAACUAACCUUCUGCCAAACUCCAUGUUGGGCAGCGCAUGCGGCGUCUGCUGCAUUUGUGUGUAUGUGGAGAGCGCCUC
....((.-(((---(((--(((.(......)...)))))..)))).))....((((((((.(.(((.((.(((((((....))))))).))))).)))))))))........ ( -29.20)
>DroSec_CAF1 4152 110 - 1
UUUAAAUCAAUAAAUAAUAACUAUA--UUACUUUAGUUUACCUUCUGCCAAACUCCAUGUUGGGCAGUGCGUGCUUCGUUUGCUGCAUUUGGGUGUAUGUAGAUAGAGCUUC
..................(((((..--......))))).((...(((((.(((.....))).)))))...))((((..((((((((((....))))).)))))..))))... ( -26.20)
>DroSim_CAF1 4157 110 - 1
UUUAAAUCAAUAAAUAAUAACUAUA--UUACUUUAGUUUACCUUCUGCCAAACUCCAUGUUGGGCAGUGCGUGCUUCGUUUGCUGCAUUUGGGUGUAUGUAGAUAGAGCUUC
..................(((((..--......))))).((...(((((.(((.....))).)))))...))((((..((((((((((....))))).)))))..))))... ( -26.20)
>DroEre_CAF1 4180 110 - 1
GUUAAAUCGUUGAAUAAUAACUAUU--UUGUUCUAUCUUACCUUCUGCCAAACUCCAUGUUGGGCAGGGCGUGCUGCGUCUGCUGCAUUUGGGUGUAUGUAGAUAGAGCUUC
.........................--..((((((((((((((((((((.(((.....))).))))))..((((.((....)).))))..))))).....)))))))))... ( -31.10)
>DroYak_CAF1 4116 110 - 1
GUUAAGUCUUUAAACUAUAACUAUU--UUAUUAUAUUUUACCUUCUGCCAAACUCCAUGUUGGGCAGGGCGUGCUGCGUCUGCUGCAUUUGGGUGUAUGUAGACAGAGCUUC
(((((((......))).))))....--............((.(((((((.(((.....))).))))))).))(((..(((((((((((....))))).))))))..)))... ( -30.10)
>consensus
UUUAAAUCAAUAAAUAAUAACUAUA__UUAUUAUAGUUUACCUUCUGCCAAACUCCAUGUUGGGCAGGGCGUGCUGCGUCUGCUGCAUUUGGGUGUAUGUAGAUAGAGCUUC
............................................(((((.(((.....))).))))).....(((..(((((((((((....))))).))))))..)))... (-24.93 = -24.35 +  -0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:50 2006