Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,221,567 – 3,221,666 |
Length | 99 |
Max. P | 0.511180 |
Location | 3,221,567 – 3,221,666 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 84.88 |
Mean single sequence MFE | -28.68 |
Consensus MFE | -19.95 |
Energy contribution | -21.95 |
Covariance contribution | 2.00 |
Combinations/Pair | 1.16 |
Mean z-score | -1.45 |
Structure conservation index | 0.70 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.511180 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3221567 99 - 20766785 ----------AUGCUCGAGU---UUCCCAUGUGAGUGUUUCGAGUACUCGAAUGCGAUGCAACAAUUGAGUCACCAAUGUAAUCGAGCGUUCU--AUACGAAUAACCUGAAUCA----- ----------..((((((((---.((.(((.((((((.......)))))).))).)).)).(((.(((......))))))..))))))((((.--....))))...........----- ( -22.30) >DroSim_CAF1 4662 117 - 1 UCAGAGAGCAAUGCUCGAUAUUAUUCCCAUGUGAGUGUUUCGAGUACUCGAAUGCGAUGCAACAAUUGAGUCACCGACGUAAUCGAGCGUUCU--AUACGAAUAACCUGAAUCAGAGCA ((((.(((...(((((((...(((((......)))))..))))))))))(((((((((.((.....)).)))..(((.....))).)))))).--...........))))......... ( -28.20) >DroEre_CAF1 4169 110 - 1 UCAGAGAGCAAUGCUCGAGA---UUCCCAUGUGAGUGUUUUGACUACUCGAAUAC-UUGCAACAAUUGAGUCACCGACGUAAUCGAGCGUUCUCUGUGUGAAUAACCUGAAUCA----- .((.((((.(((((((((((---(((...((..(((((((.((....))))))))-)..))......)))))((....))..))))))))))))).))................----- ( -32.40) >DroYak_CAF1 4185 111 - 1 UCAGAGAGCAAUGCUCGAAA---UUCCCAUGUGAGUGUUUCGAGUACUCGAAUGCGAUGCAACAAUUGAGUCACCAACGUAAUCGAGCGUUCUCUACACGAAUAACCUGAAUCA----- ..(((((((..(((((((((---(.(.(....).).))))))))))(((((.((((.((..((......))...)).)))).))))).)))))))...................----- ( -31.80) >consensus UCAGAGAGCAAUGCUCGAGA___UUCCCAUGUGAGUGUUUCGAGUACUCGAAUGCGAUGCAACAAUUGAGUCACCAACGUAAUCGAGCGUUCU__AUACGAAUAACCUGAAUCA_____ ..(((((((..(((((((((...(((......)))..)))))))))(((((.((((.((..((......))...)).)))).))))).)))))))........................ (-19.95 = -21.95 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:29 2006