| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 20,076,141 – 20,076,238 |
| Length | 97 |
| Max. P | 0.792398 |
| Location | 20,076,141 – 20,076,238 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 78.05 |
| Mean single sequence MFE | -27.33 |
| Consensus MFE | -18.83 |
| Energy contribution | -18.75 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.792398 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20076141 97 - 20766785 UGUGUUAACCUUUUAAUAUUUGCA--UCAAU-------GUUCCAGGGGAAGACCUGCCUUCCGACCUGGAGCUUGGAUCCGAGUCCAACAGCGAGAAGGAACCGGA ........(((((......((((.--.....-------(((((((((((((......)))))..))))))))((((((....))))))..)))))))))....... ( -31.50) >DroSec_CAF1 84 96 - 1 UGUUUUAACA-UUUAAUAUUUAAA--UCAAU-------GUUCCAGGGGAGGACCUGCCCUCCGACCUGGAGCUUGGAUCCGAGUCCAACAGCGAGAAGGAACCGGA ..........-.............--((((.-------(((((((((((((......)))))..)))))))))))).((((..(((..(.....)..)))..)))) ( -32.50) >DroSim_CAF1 83 96 - 1 UGUCUUAACA-AUUAAUAUUUGAA--UCAAU-------GUUCCAGGGGAGGACCUGCCCUCCGACCUGGAGCUUGGAUCCGAGUCCAACAGCGAGAAGGAACCGGA ..........-.............--((((.-------(((((((((((((......)))))..)))))))))))).((((..(((..(.....)..)))..)))) ( -32.50) >DroEre_CAF1 83 96 - 1 UGUUUUAACA-CCUAAUUAUUUAA--UCAAU-------GUUUCAGGAGAAGACCUGCCUUCCGACCUGGAGCUUGGCUCCGACUCUAACAGUGAGAAGGACCCGGA ..........-((...........--.....-------((((((((.((((......))))...))))))))..((.(((..(((.......)))..))).)))). ( -25.60) >DroYak_CAF1 83 96 - 1 UGUUUUCACA-CUUAAUUAUUUAA--UUAAU-------GUUUCAGGGGAAGACCUGCCAUCCGACUUGGAGCUUGGCUCCGACUCUAACAGCGAGAAAGACCCAGA ..(((((.(.-.((((((....))--))))(-------(((.((((......))))......((.(((((((...))))))).)).))))).)))))......... ( -20.00) >DroPer_CAF1 75 100 - 1 AAUU-UAUC-----AAUUCCUUAACUUCAAUUUGGCUUCUUUCAGGGGAGGAGCUGCCGUCAGAUUUGGAAAUUGGUUCGGACUCGAACAGUGAAAACAAUCAAGA ....-....-----.............(((((((((((((((....))))))))).(((.......)))))))))(((((....))))).((....))........ ( -21.90) >consensus UGUUUUAACA_CUUAAUAUUUUAA__UCAAU_______GUUCCAGGGGAAGACCUGCCCUCCGACCUGGAGCUUGGAUCCGACUCCAACAGCGAGAAGGAACCGGA ......................................(((((((((((((......)))))..))))))))((((.(((...((.......))...))).)))). (-18.83 = -18.75 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:48 2006