Locus 6427

Sequence ID 2R_DroMel_CAF1
Location 20,071,330 – 20,071,425
Length 95
Max. P 0.725324
window10254

overview

Window 4

Location 20,071,330 – 20,071,425
Length 95
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 82.67
Mean single sequence MFE -38.82
Consensus MFE -26.68
Energy contribution -26.22
Covariance contribution -0.47
Combinations/Pair 1.36
Mean z-score -2.15
Structure conservation index 0.69
SVM decision value 0.41
SVM RNA-class probability 0.725324
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20071330 95 - 20766785
CAGCUCACGCUGCUUCUUCUCAUUAGCUGGUUUCGACCAGUUCAAUGAAGGAGAUCCACUGCUGGGCUUUGGAGCAGUCGUCCUGCUUGAGCUGG
(((((((((((((.(((((((((((((((((....))))))).)))).))))))((((..((...))..)))))))).))).......)))))). ( -39.71)
>DroSec_CAF1 705 95 - 1
CAGCUCACGCUGUUUUUUCUCGUUAACUGGCUUCGACCAGUUCAAUGAGGGAGAUCCACUGCUGGGCUUUGGAGCAGUCGCCCUGUUCGAGCUGG
((((((..((...(((..((((((((((((......)))))).))))))..))).(((....)))))....((((((.....)))))))))))). ( -38.20)
>DroSim_CAF1 705 95 - 1
CAGCUCACGCUGCUUUUUCUCGUUAACUGGCUUCGACCAGUUCAAUGAGGGAGAUCCACUGCUGGGCUUUGGAGCAGUCGCCCUGUUCGAGCUGG
((((((.((..(((((..((((((((((((......)))))).))))))..))).(((....)))))..))((((((.....)))))))))))). ( -38.90)
>DroEre_CAF1 705 95 - 1
CAGCUCACGCUGCUUUUUUUCGGAAGCUGGCUUGGACCAGUUCAGUGAGGGAGAUCCACUGGCUGGCUUCGGAGCAGUGGCCCUGCUCGAGCUGG
((((((..((((((((......))))).))).(((((((((.(((((.((....)))))))))))).))))((((((.....)))))))))))). ( -42.70)
>DroYak_CAF1 705 95 - 1
CAGCUCACGUUGCUUUUUCUCGGAAGCUGGCUUGGACCAGUUCAAUGAGGGAGAUCCGCUGGCUGGCUUCGGAGCAGGCGCCCUGCUCGAGCUGG
((((((................(((((..(((((((....))))...((((....)).)))))..))))).(((((((...))))))))))))). ( -40.90)
>DroAna_CAF1 696 95 - 1
CAGCUCCCGCUGCUUCUUUUCGGACGUUGGCUUGGACCAGUUUAAGGCGGCAGCGCCGUUGGCAGGCUUAGGGGCAGCUGCUCUGAAGGAAUUGG
((((((((((((((.((((..((((..(((......))))))))))).))))))(((.......)))....))).)))))............... ( -32.50)
>consensus
CAGCUCACGCUGCUUUUUCUCGGAAGCUGGCUUCGACCAGUUCAAUGAGGGAGAUCCACUGCCGGGCUUUGGAGCAGUCGCCCUGCUCGAGCUGG
((((((..(((.(((((((.....((((((......))))))....)))))))...........)))....((((((.....)))))))))))). (-26.68 = -26.22 +  -0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:43 2006