Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 20,067,871 – 20,067,973 |
Length | 102 |
Max. P | 0.530359 |
Location | 20,067,871 – 20,067,973 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 78.00 |
Mean single sequence MFE | -27.38 |
Consensus MFE | -19.27 |
Energy contribution | -19.38 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.19 |
Mean z-score | -1.01 |
Structure conservation index | 0.70 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.530359 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20067871 102 - 20766785 CAUUCCACUGUACGCCAACGAGGAGAAAACUAUCUACAACAUGGUGGUGGAGGUGCCACGUUGGACCAACGCGAAAAUGGAGGUCGGUC-UGCCUGUCCCUA---------A ...((((.....(((((......(((......)))......)))))(((..(((.((.....)))))..))).....))))((.(((..-...))).))...---------. ( -24.90) >DroVir_CAF1 30716 100 - 1 CAUUCCAUUGUACGCCAACGAGGAGAAGACCAUCUACAACAUGGUCGUCGAGGUGCCACGUUGGACGAACGCCAAAAUGGAGGUAAAU------AG------CAUAAUUAUC ..(((((((((.((((((((.((.((.((((((.......)))))).))......)).)))))).)).)).....)))))))......------..------.......... ( -27.50) >DroPse_CAF1 4680 91 - 1 CAUUCCAUUGUACGCCAAUGAGGAGAAGACCAUCUACAACAUGGUGGUGGAGGUUCCACGUUGGACCAACGCCAAGAUGGAGGUAAGC------------AA---------A ..(((((((....((((.((..((((......))).)..))))))((((..(((((......)))))..))))..)))))))......------------..---------. ( -26.00) >DroWil_CAF1 833 100 - 1 CAUUCCAUUGUAUGCCAAUGAGGAGAAGACCGUCUACAAUAUGGUUGUUGAGGUGCCCCGUUGGACAAACGCCAAAAUGGAGGUAAGCA-AACAUGUCUCA----------- .....(((((.....)))))..((((.((((((.......))))))(((....(((((((((((.(....))))..)))).))))....-)))...)))).----------- ( -24.50) >DroAna_CAF1 4894 103 - 1 CAUUCCCCUCUACGCCAAUGAGGAUAAGUCCAUCUACAACAUGGUGGUGGAGGUGCCACGUUGGACCAACGCCAAGAUGGAGGUGGGCAAUGAUUGAUCCAU---------A ((.((.((((.........))))....((((((((....(((..(((((..(((.((.....)))))..)))))..))).))))))))...)).))......---------. ( -35.40) >DroPer_CAF1 8991 91 - 1 CAUUCCAUUGUACGCCAAUGAGGAGAAGACCAUCUACAACAUGGUGGUGGAGGUUCCACGUUGGACCAACGCCAAGAUGGAGGUAAGC------------AA---------A ..(((((((....((((.((..((((......))).)..))))))((((..(((((......)))))..))))..)))))))......------------..---------. ( -26.00) >consensus CAUUCCAUUGUACGCCAAUGAGGAGAAGACCAUCUACAACAUGGUGGUGGAGGUGCCACGUUGGACCAACGCCAAAAUGGAGGUAAGC______UG____AA_________A ..(((((((...((((((((.((.....(((.(((((.((...)).)))))))).)).)))))).....))....))))))).............................. (-19.27 = -19.38 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:42 2006