Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 20,067,212 – 20,067,322 |
Length | 110 |
Max. P | 0.523089 |
Location | 20,067,212 – 20,067,322 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 70.31 |
Mean single sequence MFE | -34.95 |
Consensus MFE | -10.50 |
Energy contribution | -11.70 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.21 |
Mean z-score | -1.95 |
Structure conservation index | 0.30 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.523089 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20067212 110 - 20766785 AUGCCAAGAAUGCGGACUUUGCCAACACCAUCAUUGCCGAGACCCACAAGUUCUGGCAGAACUUGGUGCACCAGAGCCCCGCAUCCG---GGUCCAUCUCCACGUGGGUUAA---A ..(((..((.(((((.(((((....(((((...((((((..((......))..))))))....)))))...)))))..)))))))..---)))((((......)))).....---. ( -36.00) >DroVir_CAF1 30024 116 - 1 AUGCCAAGAGCGCAGACUUUGCCACCUCCAUCAUUGCGGAGACGCACAAGUUCUGGCAAACCCUGAUCAAUCAGUCCAAUGUGGGCACGCCGGAAAUAGCUUGGUUUGUUUAUAUU .(((((.((((((((...))))............((((....))))...)))))))))....((((....))))...((((((((((.(((((.......))))).)))))))))) ( -35.10) >DroPse_CAF1 4005 113 - 1 AUGCGAAGAAUGCCGAUUUCGCGACUUCGAUCAUUGCCGAGACCCACAAGUUCUGGCAGACUCUGAUCCACCAGAGCAGUGUGGGCGACCACUCAAUCUCUUGGUGAGUUUU---G ..((((((........))))))((((..(((((((((((..((......))..))))))....)))))((((((((..(.((((....)))).)...))).)))))))))..---. ( -37.60) >DroWil_CAF1 156 106 - 1 AUGCCAAGAAUGCUGAAUUUGCUACCACAAUUGUGGCAGAGACACACAAGUUUUGGCAAACUUUGAUCAAUCAAACCAGUGCUGGU------GGCAUUUCUUGGUAUGUUUA---- (((((((((((((((..((((((((.......))))))))..))(((.(((.((((.....(((((....))))))))).))).))------)))).)))))))))).....---- ( -35.20) >DroAna_CAF1 4236 110 - 1 AUGCUAAGAAUGCUGAUUUCGCCAACACCAUUAUUGCCGAGACUCACAAGUUCUGGCAGAAUCUGGUACACCAGACCAGCUCUUCCA---GCACUAUUUCAACGUGCGUCUA---G ......(((..((((..................((((((..(((....)))..))))))..(((((....))))).)))).......---((((.........)))).))).---. ( -28.10) >DroPer_CAF1 8317 113 - 1 AUGCGAAGAACGCCGAUUUCGCGACUUCGAUCAUUGCCGAGACCCACAAGUUCUGGCAGACUCUGAUCCACCAGAGCAGUGUGGGCGACCACUCAAUCUCUUGGUGAGUUUU---G ...(((((..(((.(....)))).)))))....(..((((((((((((.(((((((..((......))..)))))))..)))))).((....))....))))))..).....---. ( -37.70) >consensus AUGCCAAGAAUGCCGAUUUCGCCACCACCAUCAUUGCCGAGACCCACAAGUUCUGGCAGACUCUGAUCCACCAGACCAGUGCGGGCG___ACUCAAUCUCUUGGUGAGUUUA___G ..((.((((........................((((((..((......))..))))))..(((((....))))).......................)))).))........... (-10.50 = -11.70 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:41 2006