Locus 6423

Sequence ID 2R_DroMel_CAF1
Location 20,065,250 – 20,065,346
Length 96
Max. P 0.786609
window10249

overview

Window 9

Location 20,065,250 – 20,065,346
Length 96
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 86.53
Mean single sequence MFE -15.07
Consensus MFE -13.42
Energy contribution -12.62
Covariance contribution -0.80
Combinations/Pair 1.21
Mean z-score -1.65
Structure conservation index 0.89
SVM decision value 0.57
SVM RNA-class probability 0.786609
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20065250 96 - 20766785
UCAAAAAUCAAAUA---AUUAAUUAAAAACAAAAGAAAAUUAUAACGUACCAAAACAAAAACGGUAAGCAGGCGUUUUUAGUCGCGCCAGAAACGCGCG
..............---....(((((((((.................((((...........)))).(....))))))))))(((((.......))))) ( -14.00)
>DroPse_CAF1 2110 94 - 1
ACAAAAAUUUAACAAAAGUUAAUUGAAAAUA-----AAAAUAAAACGUACCAAAACAAAAACGGUAAGCGAGCGUUUUUAGUCGCGUGUAAAACGCGCG
........(((((....)))))..((...((-----(((((......((((...........)))).......))))))).))(((((.....))))). ( -16.12)
>DroSec_CAF1 2267 96 - 1
UCAAAAAUCAAAUA---AUUAAUUAAAAACAUAAGGAAAUUAUAACGUACCAAAACAAAAACGGUAAGCGGGCGUUUUUAGUCGCGCCAGAAACGCGCG
..............---....(((((((((((((.....))))..((((((...........)))..)))...)))))))))(((((.......))))) ( -15.70)
>DroSim_CAF1 2278 96 - 1
UCAAAAAUCAAAUA---AUUAAUUAAAAACAAAAGGAAAUUAUAACGUACCAAAACAAAAACGGUAAGCGGGCGUUUUUAGUCGCGCCAGAAACGCGCG
..............---....(((((((((.................((((...........)))).(....))))))))))(((((.......))))) ( -14.00)
>DroYak_CAF1 2307 96 - 1
UCAAAAAUCAAAUA---AUUAGUUAAAAACAAAAGGAAAUUAUAACGUACCAAAACAAAAACGGUAAGCAGGCGUUUUUAGUCGCGCCAGAAACGCGCG
..............---.....((((((((.................((((...........)))).(....))))))))).(((((.......))))) ( -13.00)
>DroPer_CAF1 6423 94 - 1
ACAAAAAUUUAACAAAAGUUAAUUGAAAAUA-----AAAUAAAAACGUACCAAAACAAAAACGGUAAGCGAGCGUUUUUAGUCGCGUGUAAAACGCGCG
........(((((....))))).........-----...((((((((((((...........)))......)))))))))..((((((.....)))))) ( -17.60)
>consensus
UCAAAAAUCAAAUA___AUUAAUUAAAAACAAAAGGAAAUUAUAACGUACCAAAACAAAAACGGUAAGCGGGCGUUUUUAGUCGCGCCAGAAACGCGCG
.....................(((((((((.................((((...........)))).(....))))))))))(((((.......))))) (-13.42 = -12.62 +  -0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:38 2006