Locus 6422

Sequence ID 2R_DroMel_CAF1
Location 20,064,866 – 20,064,969
Length 103
Max. P 0.536334
window10248

overview

Window 8

Location 20,064,866 – 20,064,969
Length 103
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 89.68
Mean single sequence MFE -22.28
Consensus MFE -16.88
Energy contribution -17.00
Covariance contribution 0.12
Combinations/Pair 1.12
Mean z-score -1.52
Structure conservation index 0.76
SVM decision value 0.01
SVM RNA-class probability 0.536334
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20064866 103 - 20766785
UCUAAUAUUUAGCAUGUGUGUAGGGUACUCGUAUUCGGAUAUAU--GUAAGGCUUUAGCUUUAGAUAGGUAUGCAUAUACUAUAUACUAUAUAGGUAAAUACAUA
.....((((((....((((((((..((..((((((......(((--.((((((....)))))).)))))))))..))..))))))))....))))))........ ( -22.80)
>DroSec_CAF1 1884 103 - 1
UCUAAUAUUUAGCAUGUGUGUAGGGUACUCGUAUUCGGAUACAU--GUAAGGCUUUAGCUUUAGAUAGGUAUGCAUAUACUAUAUACUAUAUAGGCAAAUACAUA
.....(((((.(((((((((((..(((..((....))..)))((--.((((((....)))))).))...))))))))).((((((...))))))))))))).... ( -23.50)
>DroSim_CAF1 1894 103 - 1
UCUAAUAUUUAGCAUGUGUGUAGGGUACUCGUAUUCGGAUACAU--GUAAGGCUUUAGCUUUAGAUAGGUAUGCAUAUACUAUAUACUAUAUAGGCAAAUACAUA
.....(((((.(((((((((((..(((..((....))..)))((--.((((((....)))))).))...))))))))).((((((...))))))))))))).... ( -23.50)
>DroEre_CAF1 1903 92 - 1
UCUAACAUUUAGCAUGUGUGUAGGGUACUCGUAUUCGGAUACAU--GUAAGGCUUUAGCUUUAGAUAGGUAUGCAUAUAC-------UAUAUAGGCAAA----UA
((((.....(((.(((((((((..(((..((....))..)))((--.((((((....)))))).))...))))))))).)-------))..))))....----.. ( -20.00)
>DroYak_CAF1 1875 94 - 1
UCUAAUAGUAAGCAUGUGUGUAGGGUAUUCGUAUUCGGAUACAUACGUAGGGCUUUAGCUUUAGAUAGGUAUGCAUAUAC-------UUUAUAGGCAAA----UA
((((..((((.(((((...(((..(((((((....))))))).))).((((((....))))))......)))))...)))-------)...))))....----.. ( -21.60)
>consensus
UCUAAUAUUUAGCAUGUGUGUAGGGUACUCGUAUUCGGAUACAU__GUAAGGCUUUAGCUUUAGAUAGGUAUGCAUAUACUAUAUACUAUAUAGGCAAAUACAUA
...........((...(((((((.......((((..(.((((.....((((((....)))))).....)))).)..))))......))))))).))......... (-16.88 = -17.00 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:37 2006