Locus 6421

Sequence ID 2R_DroMel_CAF1
Location 20,063,676 – 20,063,776
Length 100
Max. P 0.626758
window10247

overview

Window 7

Location 20,063,676 – 20,063,776
Length 100
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 85.11
Mean single sequence MFE -20.28
Consensus MFE -16.22
Energy contribution -17.13
Covariance contribution 0.92
Combinations/Pair 1.13
Mean z-score -1.85
Structure conservation index 0.80
SVM decision value 0.19
SVM RNA-class probability 0.626758
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20063676 100 + 20766785
GCAGCUGCAGCACUAUCUGAAAGUGAUCAACGGAUCACCCUAUCCGUUUCACAAGCCCAUCUACCACUAGACUCCUAAC-UUCGACCACUUUCGU------UUCCAC
...((....)).......(((((((.(((((((((......)))))))...........((((....))))........-...)).)))))))..------...... ( -19.90)
>DroSec_CAF1 723 88 + 1
GCAGCUGCAGCACUAUCUGAAAGUGAUCAACGGAUCGCCCUAUCCGUUUCACAAGCCCGUCUACCACUAGACUCCUAAA-UUCGGCCAC------------------
...((....)).....(((((.((((..(((((((......)))))))))))......(((((....))))).......-)))))....------------------ ( -20.50)
>DroSim_CAF1 713 100 + 1
GCAGCUGCAGCACUAUCUGAAAGUGAUCAACGGAUCGCCCUAUCCGUUUCACAAGCCCGUCUACCACUAGACUCCUAGC-UUCGGCCACUUUCGU------UUCCAC
...((((.(((...........((((..(((((((......)))))))))))......(((((....))))).....))-).)))).........------...... ( -25.40)
>DroEre_CAF1 738 105 + 1
GCAGCUGCAGCACUAUCUGAAAGUGAUCAACGGAUCGCCCUAUCCGUUUCACAAGCCCGUCUACCACUAGACUCCUUAC-UUCGACCACUUCCGUUUC-GUUUCCAC
...((....)).......((((((((..(((((((......)))))))))))......(((((....))))).......-..............))))-........ ( -19.00)
>DroYak_CAF1 710 106 + 1
GCAGCUGCAGCACUAUCUGAAAGUGAUCAACGGAUCGCCCUAUCCGUUUCACAAGCCCGUCUACCACUAGACUCCUUAC-UUCGACCACUUUCGUUUCUACUUCCAC
...((....)).......(((((((.(((((((((......)))))))..........(((((....))))).......-...)).))))))).............. ( -23.30)
>DroAna_CAF1 694 102 + 1
GCAGCUCCAGCACUAUCUAAAAGUGAUCAAUGGAUCGCCAUAUCCAUUCCACAAGCCCAAAUACCAUUAGAUUUCUUACCUACUGUCACUUUCGUU-----UUCCGC
((.((....))........(((((((..(((((((......)))))))................((.(((.........))).)))))))))....-----....)) ( -13.60)
>consensus
GCAGCUGCAGCACUAUCUGAAAGUGAUCAACGGAUCGCCCUAUCCGUUUCACAAGCCCGUCUACCACUAGACUCCUAAC_UUCGACCACUUUCGU______UUCCAC
...((....)).......(((((((.(((((((((......)))))))..........(((((....)))))...........)).))))))).............. (-16.22 = -17.13 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:36 2006