| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 20,061,696 – 20,061,791 |
| Length | 95 |
| Max. P | 0.957864 |
| Location | 20,061,696 – 20,061,791 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 78.89 |
| Mean single sequence MFE | -21.30 |
| Consensus MFE | -10.12 |
| Energy contribution | -10.72 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.49 |
| Structure conservation index | 0.48 |
| SVM decision value | 1.48 |
| SVM RNA-class probability | 0.957864 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20061696 95 - 20766785 UCAUAUAUUUAUAUGAAUACUAUGAAUACUAUUCGCGAUAAGUGAGGCUUCUCGCUUAAAAGUAUGCUCCACCAAGGGGUCUUUAUUUGAUAUAU ..(((((((...(((((((((..((((...))))....((((((((....))))))))..)))))(((((.....)))))..))))..))))))) ( -21.00) >DroSec_CAF1 21276 93 - 1 ACAUAUAUAUCUAUGAAUACUAUACAUAUU-UUCGCGAUAAGUGAGACUUCUCGCUUAAAUGUAUGCUCCACCG-GGGGUCUUUAUUUGAUAUAA .....((((((.(((((........(((((-(..((((.(((.....))).))))..))))))..(((((....-))))).)))))..)))))). ( -21.10) >DroSim_CAF1 21772 92 - 1 AUAUAAAUAUCUAUGAAUACUAUACAUAUU-UUCGCGAUAAGUGAGACUUCUCGCUUAAAAGUAUGCUCCACCG-G-GGUAUUUAUUUGAUAUAA ......(((((.(((((((((...((((((-((.....((((((((....))))))))))))))))..((...)-)-)))))))))..))))).. ( -23.80) >DroEre_CAF1 21926 90 - 1 --GCCUGCUUGUAUGAAUACUAUAUGAAUA-UUCGCUAUAAGUGAGUCUUCUCGCUAAAAAGUAUGCUCCAGCA-G-GCUUUUUAUUUGAUAUAA --(((((((.(((((..........(((.(-(((((.....)))))).)))...........)))))...))))-)-))................ ( -23.80) >DroYak_CAF1 22153 86 - 1 --GCCUGUUUGUAUGAAUAAUAUA----UA-UAAGCAAUAAGUGAGACUUCUCGCUUAAAAGUAUGCUCCACCA-C-GAUCUUUAUAUAAUACAU --((.((((((((((.......))----))-)))))).((((((((....)))))))).......)).......-.-.................. ( -16.80) >consensus __AUAUAUUUCUAUGAAUACUAUACAUAUU_UUCGCGAUAAGUGAGACUUCUCGCUUAAAAGUAUGCUCCACCA_G_GGUCUUUAUUUGAUAUAA .........((((((((((...................((((((((....))))))))............(((....)))...))))).))))). (-10.12 = -10.72 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:35 2006