| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,218,544 – 3,218,650 |
| Length | 106 |
| Max. P | 0.849574 |
| Location | 3,218,544 – 3,218,650 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 76.84 |
| Mean single sequence MFE | -31.80 |
| Consensus MFE | -18.73 |
| Energy contribution | -19.23 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.849574 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3218544 106 + 20766785 -AA----UAACUUACCGUAAAAAGUUCUGCAGGCUUCCAAGGCUGCAGUAUUCAAUUAGCAACAUCAUCUGGUUGCUAAAACGAGUGGAGUAUCCCACGAUACCCACAAUA -..----........(((....(((.((((((.((....)).)))))).)))...((((((((........)))))))).))).((((.(((((....))))))))).... ( -34.00) >DroVir_CAF1 1396 108 + 1 ACCCAG---UCCUACCGUAAAAAGCUCUGCAGGCUUCCCAGACCGCAGUACUCGGUGAGCAGCAUCAUGCGAUUGCUGAACCUGGUCGAGUAGCCCACAAUGCCAACAAUA ......---..............((..((..((((.....((((((((((.(((((((......)))).))).)))))....)))))....))))..))..))........ ( -26.80) >DroPse_CAF1 1394 110 + 1 -GCCAUUCCACUCACCGCAGAAAGUUUUGCAGGCUGCCGAGGCUGCAGUACUCGAUGAGCAGCAUCAUGCGAUUACUGUACCUCGUCGAGUAGCCCACGAUGCCCACGAUG -..((((.........(((((....))))).(((((((((((.(((((((.(((((((......)))).))).))))))))))))....))))))...))))......... ( -37.10) >DroGri_CAF1 1223 108 + 1 CUCCAC---ACUUACCGCAGAAAGCUCUGCAGGCUGCCUAGACCGCAGUAUUCGGUGAGGAGCAUCAUGCGAUUGCUGAACCUGGUCGAGUAGCCCACAAUGCCAACAAUA ......---.......(((((....))))).((((((...((((((((((.(((((((......)))).))).)))))....)))))..))))))................ ( -34.80) >DroWil_CAF1 1871 110 + 1 -CCAAGUCCACCUACCGCAAAAAGUUUUGCAAACUGCCCAGGCUGCAAUACUCUAUGAGCAACAUCAUACGAUCCCUGCAUCUGGUGGAAUAACCGACAAUGCCUACUAUA -.....((((((....(((....((.(((((..((....))..))))).))(((((((......))))).))....)))....))))))...................... ( -25.30) >DroPer_CAF1 1394 110 + 1 -GCCAUUCCACUCACCGCAGAAAGUUUUGCAGACUGCCGAGGCUGCAGUACUCGAUGAGCAGCAUCAUGCGAUUGCUGUACCUCGUCGAGUAGCCCACGAUGCCCACGAUG -........((((...(((((....))))).....(.(((((.(((((((.(((((((......)))).))).)))))))))))).))))).................... ( -32.80) >consensus _CCCAG_CCACUUACCGCAAAAAGUUCUGCAGGCUGCCCAGGCUGCAGUACUCGAUGAGCAGCAUCAUGCGAUUGCUGAACCUGGUCGAGUAGCCCACAAUGCCCACAAUA ................(((.......((((((.((....)).))))))((((((((.(((((((((....))).))))...)).))))))))........)))........ (-18.73 = -19.23 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:28 2006