Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 20,058,146 – 20,058,246 |
Length | 100 |
Max. P | 0.644243 |
Location | 20,058,146 – 20,058,246 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 90.62 |
Mean single sequence MFE | -18.80 |
Consensus MFE | -15.82 |
Energy contribution | -14.70 |
Covariance contribution | -1.12 |
Combinations/Pair | 1.27 |
Mean z-score | -1.51 |
Structure conservation index | 0.84 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.644243 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20058146 100 + 20766785 AAAUUGCAAUUAAUAAAAUACCAGUAGUUAUAGCUUAUGUGUCAAUACUAGUUAGCUAAACUGGCUAAUUAGGCAAUAGCGAUUACAACUCCCCAGGAAA .((((((..........((((....(((....)))...)))).....((((((((((.....))))))))))......)))))).....(((...))).. ( -19.60) >DroSec_CAF1 17755 99 + 1 AAAUUGCAAUUAAAAAAAUACCAGUAGUUAUAGCGUAUGUGUCAAUACUAGCUAGCUAAACUGGCUAAUUAGGCAAUAGCAAUUACAACUC-CCAGGAAA .((((((..............((((.....((((((((......))))..)))).....))))(((.....)))....)))))).....((-....)).. ( -18.20) >DroSim_CAF1 18235 99 + 1 AAAUUGCAAUUAAUAAAAUACCAGUAGUUAUAGCGUAUGUGUCAAUACUAGCUAGCUAAACUGGCUAAUUAGGCAAUAGCAAUUACAACUC-CCAGGAAA .((((((..............((((.....((((((((......))))..)))).....))))(((.....)))....)))))).....((-....)).. ( -18.20) >DroYak_CAF1 18354 99 + 1 AAAUUGCAAUUCAUAAUGUACCAGUAGUUAUAAUUUAUGUGCCAAUACUAGUUGGGUAAACUGGCUAAUUAGGCAAUCACAACUACAGCUC-CCUGGAAA ....((((........))))((((.((((..........(((((((..((((..(.....)..))))))).))))...........)))).-.))))... ( -19.20) >consensus AAAUUGCAAUUAAUAAAAUACCAGUAGUUAUAGCGUAUGUGUCAAUACUAGCUAGCUAAACUGGCUAAUUAGGCAAUAGCAAUUACAACUC_CCAGGAAA .......................((((((...((.....(((((((..(((((((.....)))))))))).))))...)))))))).............. (-15.82 = -14.70 + -1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:34 2006