Locus 6416

Sequence ID	2R_DroMel_CAF1
Location	20,055,646 – 20,055,760
Length	114
Max. P	0.845771

overview

Window 9

Location	20,055,646 – 20,055,760
Length	114
Sequences	4
Columns	114
Reading direction	forward
Mean pairwise identity	93.21
Mean single sequence MFE	-27.95
Consensus MFE	-23.94
Energy contribution	-23.75
Covariance contribution	-0.19
Combinations/Pair	1.04
Mean z-score	-1.90
Structure conservation index	0.86
SVM decision value	0.77
SVM RNA-class probability	0.845771
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20055646 114 + 20766785
AAGCCGCACGGCACCAGCAUGCUGCCCAAAUGGAAUGUGAAAAACCUUCCAAAACACAAAUCACGCGAUUUGGACACACGGCGAGAAAUAAAAGUAGCCUGUUGCGCAAGCAGA
..(((....)))...((((.(((((.....(((((.((.....)).))))).....((((((....)))))).....................))))).))))((....))... ( -31.00)
>DroSec_CAF1 15336 107 + 1
AAGCCGCACGGCACCAGCA-----CCCAAGUGGAAUGUGAAAAACCUUCCAAAACACAAAUCACGCGAUUUGGAC--ACGGCGAGAAAUAAAAGUAGCCUGUUGCGCAAGCAGA
..(((....))).......-----......(((((.((.....)).))))).....((((((....))))))(((--(.(((..............)))))))((....))... ( -27.44)
>DroSim_CAF1 15782 107 + 1
AAGCCGCACGGCACCAGCA-----CCCAAGUGGAAUGUGAAAAACCUUCCAAAACACAAAUUACGCGAUUUGGAC--ACGGCGAGAAAUAAAAGUAGCCUGUUGCGCAAGCAGA
..(((....))).......-----......(((((.((.....)).))))).....((((((....))))))(((--(.(((..............)))))))((....))... ( -25.14)
>DroEre_CAF1 15612 106 + 1
AAGCCACACGGCACCAGCA-----CCCAAGUGGAAUGUGAAAAACCUUCCAAAACACAAAUCACGCGAUUUGGAC--ACAGGGAGAAAUAA-AGUCGACUGUUGCGCAAGCAGA
..(((....)))..((((.-----(((...(((((.((.....)).))))).....((((((....))))))...--...))).((.....-..))).)))((((....)))). ( -28.20)
>consensus
AAGCCGCACGGCACCAGCA_____CCCAAGUGGAAUGUGAAAAACCUUCCAAAACACAAAUCACGCGAUUUGGAC__ACGGCGAGAAAUAAAAGUAGCCUGUUGCGCAAGCAGA
..(((....)))..((((............(((((.((.....)).))))).....((((((....))))))........................).)))((((....)))). (-23.94 = -23.75 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:29 2006