Locus 6413

Sequence ID 2R_DroMel_CAF1
Location 20,052,260 – 20,052,351
Length 91
Max. P 0.768071
window10231

overview

Window 1

Location 20,052,260 – 20,052,351
Length 91
Sequences 3
Columns 92
Reading direction reverse
Mean pairwise identity 92.75
Mean single sequence MFE -32.80
Consensus MFE -26.55
Energy contribution -27.00
Covariance contribution 0.45
Combinations/Pair 1.12
Mean z-score -2.59
Structure conservation index 0.81
SVM decision value 0.52
SVM RNA-class probability 0.768071
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20052260 91 - 20766785
UUUUGGUGUUUGCUGUUUGGUAUUUUG-GCUUUGGCUUCGAAUGCCGACUCCGAUUCCGAACGCCAGUCGCAUUCCCUAGGGACCUAUGACA
...(((((((((....((((....(((-((((((....)))).)))))..))))...)))))))))((((...(((....)))....)))). ( -29.60)
>DroSec_CAF1 12054 92 - 1
UUUUGCCGUUUGGUAUUUGGUAUUUGGUGUUUUGGCUUCGAGUGCCGACUCCGAUUCCGAACGCGAGUCGCAGUCCCUAGGGACCUAUGACA
..((((.((((((...((((...((((..(((.......)))..))))..))))..))))))))))((((..((((....))))...)))). ( -32.10)
>DroSim_CAF1 12409 92 - 1
UUUUGCCGUUUGGUGUUUGGUAUUUGGUGUUUUGGCUUCGAGUGCCGACUCCGAUUCCGAACGCCAGUCGCAGUCCCUAGGGACCUAUGACA
..........((((((((((...((((.(((..(((.......)))))).))))..))))))))))((((..((((....))))...)))). ( -36.70)
>consensus
UUUUGCCGUUUGGUGUUUGGUAUUUGGUGUUUUGGCUUCGAGUGCCGACUCCGAUUCCGAACGCCAGUCGCAGUCCCUAGGGACCUAUGACA
...((.(((((((.(((((((((((((.((....)).)))))))))).....))).))))))).))((((..((((....))))...)))). (-26.55 = -27.00 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:21 2006