Locus 6412

Sequence ID 2R_DroMel_CAF1
Location 20,051,690 – 20,051,788
Length 98
Max. P 0.759667
window10230

overview

Window 0

Location 20,051,690 – 20,051,788
Length 98
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 94.35
Mean single sequence MFE -15.23
Consensus MFE -13.90
Energy contribution -14.23
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.21
Structure conservation index 0.91
SVM decision value 0.50
SVM RNA-class probability 0.759667
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20051690 98 + 20766785
GUAAUAAACGUUAAACGUUUAAUUAUAAACAAAAAAUACGGCUCGAACUUGGAGCAGCUUUCAAGAUUGGCAGCAAUUAACAUUAAAGCGAAAACAAA
((((((((((.....))))).)))))..............((((.......)))).(((((...(((((....)))))......)))))......... ( -15.50)
>DroSec_CAF1 11475 98 + 1
GUAAUAAACGUUAACCGUUUAAUUAUAAACAAAAAAUACGGCUCGAACUUGGAGCAGCUUUCAAGAUUGGCAGCAAUUAACAUUAAAGCGAAAACAAA
((((((((((.....))))).)))))..............((((.......)))).(((((...(((((....)))))......)))))......... ( -14.60)
>DroSim_CAF1 11828 98 + 1
GUAAUAAACGUUAAACGUUUAAUUAUAAACAAAAAAUACGGCUCGAACUUGGAGCAGCUUUCAAGAUUGGCAGCAAUUAACAUUAAAGCGAAAACAAA
((((((((((.....))))).)))))..............((((.......)))).(((((...(((((....)))))......)))))......... ( -15.50)
>DroEre_CAF1 11781 98 + 1
GUAAUAAACGUUAAACGUUUAAUUAUAAACAAAAAAUACGGCUCGAACGUGGAGCAGCUUUCAAGAUUGGCAGCAAUUAACAUUAAAGCGAAAACAAA
((((((((((.....))))).)))))..............((((.......)))).(((((...(((((....)))))......)))))......... ( -15.50)
>DroYak_CAF1 11771 98 + 1
GUAAUAAACGUUAAACGUUUAAUUAUAAACAAAAAAUACGGCUCGAACGUGGAGCAGCUUUCAAGAUUGGCAGCAAUUAACAUUAAAGCGAAAACAAA
((((((((((.....))))).)))))..............((((.......)))).(((((...(((((....)))))......)))))......... ( -15.50)
>DroAna_CAF1 13319 95 + 1
GUAAUAAACGUUA-ACGUUUAAUUAUAAACAAAACCCA-AACUCGAACUUGGAGCAGCUUUCAAGAUUGGCAGCAAUUAAAAUC-AAGCGAAAUUACC
(((((...((((.-...(((((((...........(((-(........)))).((.(((.........))).)))))))))...-.))))..))))). ( -14.80)
>consensus
GUAAUAAACGUUAAACGUUUAAUUAUAAACAAAAAAUACGGCUCGAACUUGGAGCAGCUUUCAAGAUUGGCAGCAAUUAACAUUAAAGCGAAAACAAA
((((((((((.....))))).)))))..............((((.......)))).(((((...(((((....)))))......)))))......... (-13.90 = -14.23 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:20 2006