| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 20,049,259 – 20,049,350 |
| Length | 91 |
| Max. P | 0.806703 |
| Location | 20,049,259 – 20,049,350 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 80.75 |
| Mean single sequence MFE | -25.73 |
| Consensus MFE | -12.84 |
| Energy contribution | -12.73 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.07 |
| Mean z-score | -3.60 |
| Structure conservation index | 0.50 |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.806703 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20049259 91 - 20766785 UGUGUCCGUGGCACAGGCAACACAGCAGCACUGUGCACGCACACACACACACACAAGUGACCGUAAUGGAGCACCCAUUACAGACUUAAAU (((((.((((.(((((((.........)).))))))))).)))))..(((......)))...(((((((.....))))))).......... ( -31.10) >DroEre_CAF1 9483 76 - 1 UGUGGCCGUGGCACAGC---------AACACUUGC------CACGCACACACACAAGCGAACAUAAUGGAGCACCCAUUACAGACUUAAAU ((((..(((((((.((.---------....)))))------))))..))))............((((((.....))))))........... ( -21.30) >DroYak_CAF1 9438 83 - 1 UGUGGCCGUGGCACAGCA-AC-CAGCAACACUUGC------CACGCACACACACAAGCGAACGUAAUGGAGCACCCAUUACAGACUUAAAU ((((..(((((((..((.-..-..))......)))------))))..))))...........(((((((.....))))))).......... ( -24.80) >consensus UGUGGCCGUGGCACAGC__AC_CAGCAACACUUGC______CACGCACACACACAAGCGAACGUAAUGGAGCACCCAUUACAGACUUAAAU ((((.(....)))))............................(((..........)))...(((((((.....))))))).......... (-12.84 = -12.73 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:18 2006