Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,216,640 – 3,216,740 |
Length | 100 |
Max. P | 0.512976 |
Location | 3,216,640 – 3,216,740 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 85.80 |
Mean single sequence MFE | -34.23 |
Consensus MFE | -26.36 |
Energy contribution | -27.20 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.27 |
Mean z-score | -1.91 |
Structure conservation index | 0.77 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.512976 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3216640 100 - 20766785 ACUGCUGUCGCCUCCGCCGGACACCAUGUCCACCGAUUCCCUACAGCUGUCCACACUGCCCGGUGCGCACCAUCUCCAGCUGCUGUCCACUGGGCAGUCG ((.(((((.((....)).((((.....))))...........))))).))....(((((((((((.(((.((.(....).)).))).))))))))))).. ( -35.90) >DroPse_CAF1 10168 100 - 1 ACUUCUGCAGCCAGCAAGAGAGCCCCUGUCCGCAGAUUCCCUACGCUUGUCCGAACUGUCCGGUACGGGACAUCACCAGGAGUUGUUCGCUGCAGCGAAG ....(((((((.(((((........(((....)))....(((.....((((((.(((....))).).))))).....)))..))))).)))))))..... ( -29.80) >DroSec_CAF1 8368 100 - 1 ACUGCUGUCGCCUCCGCCGGACACCAUGUCCACCGAUUCCCUACAGCUGUCCACACUGCCCGGUGCGCACCAUCUCCAGCUGCUGUCCAUUGGGCAGUCG ((.(((((.((....)).((((.....))))...........))))).))....(((((((((((.(((.((.(....).)).))).))))))))))).. ( -33.50) >DroSim_CAF1 585 100 - 1 ACUGCUGUCGCCUCCGCCGGACACCAUGUCCACCGAUUCCCUACAGCUGUCCACACUGCCCGGUGCGCACCAUCUCCAGCUGCUGUCCACUGGGCAGUCG ((.(((((.((....)).((((.....))))...........))))).))....(((((((((((.(((.((.(....).)).))).))))))))))).. ( -35.90) >DroEre_CAF1 5509 100 - 1 ACUGUUGUCGCCUCCGCCGGACACCAUGUCCACCGAUUCCCUACAGCUGUCCACACUGUCCGGUGCGCACCAUCUCCAGCUGCUGCCCACUGGGCAGUCG .((((.(((((....)).((((.....))))...))).....))))........(((((((((((.(((.((.(....).)).))).))))))))))).. ( -32.80) >DroYak_CAF1 5276 100 - 1 ACUGCUGUCGCCUUCGCCGGACACCAUGUCCACCGAUUCCCUACAGCUGUCCACACUGCCCGGUGCGCACCAUCUCUAGCUGCUGCCCAUUGGGCAGUCG ((.(((((.(...(((..((((.....))))..)))....).))))).))....(((((((((((.(((.((.(....).)).))).))))))))))).. ( -37.50) >consensus ACUGCUGUCGCCUCCGCCGGACACCAUGUCCACCGAUUCCCUACAGCUGUCCACACUGCCCGGUGCGCACCAUCUCCAGCUGCUGUCCACUGGGCAGUCG ((.(((((......((..((((.....))))..)).......))))).))....(((((((((((.(((.((.(....).)).))).))))))))))).. (-26.36 = -27.20 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:27 2006