| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 20,044,777 – 20,044,867 |
| Length | 90 |
| Max. P | 0.990850 |
| Location | 20,044,777 – 20,044,867 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 71.11 |
| Mean single sequence MFE | -22.67 |
| Consensus MFE | -13.46 |
| Energy contribution | -15.27 |
| Covariance contribution | 1.81 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.59 |
| SVM decision value | 2.23 |
| SVM RNA-class probability | 0.990850 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20044777 90 + 20766785 UUCCGC---------------GGCGGCACAAUCGUAUAAUUUAUACGGUUUUCUUGGCUUGAGUUCAGUUUGAGUUGUGUUCGAGUUUGGGUUGUCUUGCGUUUA ...(((---------------((((((..(((((((((...)))))))))..((..(((((((..(((......)))..)))))))..))))))))..))).... ( -25.30) >DroSec_CAF1 4690 90 + 1 UUCUGC---------------GGCGGCACAAUCGUAUAAUUUAUACGGUUUUCUUGGCUUGAGUUCAGUUUGAGUUGUAUUCGAGCUUGUGUUGUCUUGCGUUUG ....((---------------(((((((((((((((((...))))))))......(((((((((.(((......))).))))))))))))))))))..))..... ( -29.00) >DroWil_CAF1 4427 95 + 1 UUCUGCCACAUUGAAACAUUCGAGGAAAUAAUCGUAUAAAUUAUACAGUUUAUUUUACC--AUUUCCAUUUGUAUCUUUUUCUGUCUUUUUUUGUCU-------- .......(((..((((.((.(((((((((......(((((((....)))))))......--))))))..))).)).))))..)))............-------- ( -9.50) >DroYak_CAF1 4849 90 + 1 UUCCGA---------------GGCGGCACAAUCGUAUAAUUUAUACGGUUUUCUUGGCUUGAGUUCAGUUUGAGUUGUGUUCGAGUUUGGGUUGUCUUGCGUUUG ...(((---------------((((((..(((((((((...)))))))))..((..(((((((..(((......)))..)))))))..)))))))))))...... ( -26.90) >consensus UUCCGC_______________GGCGGCACAAUCGUAUAAUUUAUACGGUUUUCUUGGCUUGAGUUCAGUUUGAGUUGUGUUCGAGCUUGGGUUGUCUUGCGUUUG .....................(((((((((((((((((...))))))))......((((((((..(((......)))..)))))))))))))))))......... (-13.46 = -15.27 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:14 2006