Locus 6404

Sequence ID 2R_DroMel_CAF1
Location 20,030,068 – 20,030,159
Length 91
Max. P 0.660778
window10218

overview

Window 8

Location 20,030,068 – 20,030,159
Length 91
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 89.67
Mean single sequence MFE -14.52
Consensus MFE -13.60
Energy contribution -13.44
Covariance contribution -0.16
Combinations/Pair 1.05
Mean z-score -1.24
Structure conservation index 0.94
SVM decision value 0.27
SVM RNA-class probability 0.660778
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20030068 91 - 20766785
CCUUUGCCAAGCAAAUGCAACAUACUUCUUAUUAUUAUUAUUACGAAUUAUAAUUGUAAUCGAA--CUUC-AUCUUUGGUAAUUGCUUUUGCAG
..........(((((.((((..((((.............(((((((.......)))))))....--....-......)))).)))).))))).. ( -14.33)
>DroPse_CAF1 48349 92 - 1
CCUUUGCCAAGCAAAUGCGACAUUUUUAUCAUUA--AUUAUUACAAAUUAUAAUUGUAAUUGAAGCCCUAAUUUUUUGGUAAUUGCUUUUGCAG
..........(((((.((((.....((((((..(--((((.....((((((....)))))).......)))))...)))))))))).))))).. ( -14.80)
>DroSec_CAF1 48372 91 - 1
CCUUUGCCAAGCAAAUGCGACAUACUUCUUAUUAUUAUUAUUACAAACUAUAAUUGUAAUCGAA--CUUC-AUCUUUGGUAAUUGCUUUUGCAG
..........(((((.((((..((((.............(((((((.......)))))))....--....-......)))).)))).))))).. ( -14.33)
>DroSim_CAF1 48511 91 - 1
CCUUUGCCAAGCAAAUGCGACAUACUUCUUAUUAUUAUUAUUACAAAUUAUAAUUGUAAUCGAA--CUUC-AUCUUUGGUAAUUGCUUUUGCAG
..........(((((.((((..((((.............(((((((.......)))))))....--....-......)))).)))).))))).. ( -14.33)
>DroPer_CAF1 51999 92 - 1
CCUUUGCCAAGCAAAUGCGACAUUUUUAUCAUUA--AUUAUUACAAAUUAUAAUUGUAAUUGAAGCCCUAAUUUUUUGGUAAUUGCUUUUGCAG
..........(((((.((((.....((((((..(--((((.....((((((....)))))).......)))))...)))))))))).))))).. ( -14.80)
>consensus
CCUUUGCCAAGCAAAUGCGACAUACUUCUUAUUAUUAUUAUUACAAAUUAUAAUUGUAAUCGAA__CUUC_AUCUUUGGUAAUUGCUUUUGCAG
...(((((((((....)).....................(((((((.......)))))))...............))))))).(((....))). (-13.60 = -13.44 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:08 2006