Locus 6403

Sequence ID 2R_DroMel_CAF1
Location 20,027,881 – 20,027,979
Length 98
Max. P 0.910176
window10217

overview

Window 7

Location 20,027,881 – 20,027,979
Length 98
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 75.31
Mean single sequence MFE -33.09
Consensus MFE -15.23
Energy contribution -15.37
Covariance contribution 0.14
Combinations/Pair 1.35
Mean z-score -2.23
Structure conservation index 0.46
SVM decision value 1.07
SVM RNA-class probability 0.910176
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20027881 98 - 20766785
CCAGCUGGGCCCCAGGCCCACUUCGAUCCGAUGAGCAUUGCCGAGCACAGCACCCACAACAACUAUGAUGGGUAGCAGUCUCUCUAGGCCCAGCUUGA
(.(((((((((...(((....((((......))))....)))(((.((.(((((((((.......)).))))).)).)))))....))))))))).). ( -37.00)
>DroSec_CAF1 44892 98 - 1
CCAGCUGGGUCCCAGGCCCACUUCCAUCCGAUGGGCAUUGCCGAGCACAUCACCCACAACAACUAUGAUGGGUAGCAGCCUUUCCAGGCCCAGCUUGA
(.(((((((((..((((............((((.((........)).))))(((((((.......)).)))))....)))).....))))))))).). ( -33.90)
>DroSim_CAF1 45762 98 - 1
CCAGCUGGGCCCCAGACCCACUUCCAUCCGAUGGGCAUUGCCGAGCACGGCACCCACAACAACUAUGAUGGGUAGCAGCCUCUGCAGGCCCAGCUUGA
(.(((((((((....((((((..........((((...(((((....)))))))))..........).))))).((((...)))).))))))))).). ( -41.55)
>DroEre_CAF1 50977 98 - 1
CCAGCUGGGGCUCAGGCCCAUCUCGAGCCGAUGGGCAUUGCCGAGCACCACACCCACAACUAUUAUGAUGGCCAGCAGCCUCUCCAGGCCCAGUUUGA
...((((((((....(((((((.......)))))))...)))...........(((((.......)).)))))))).((((....))))......... ( -33.60)
>DroYak_CAF1 50448 98 - 1
CCAGGUGGGUCUCAAUCCCAGCUCGAUCCGAUGGGCAUUGCCGAGCACCAGACCCACAACUAUCAUGAUGGCUAGCAGCCGCUCCAGGCCCAGUUUGA
.(((((((((((((((((((..(((...))))))).))))..((((.............(......)..(((.....))))))).))))))).)))). ( -28.60)
>DroAna_CAF1 49965 98 - 1
CCAAUUUUCAUCCGAACUCCUUUCAAGUUGAUGAGCUUUCGACAAUACGAUGGCCAAAACAAUGGCCAUGGGUAUCAUACCCUUAAGUCCAAAAUUCA
......((((((..((((.......)))))))))).....(((......(((((((......)))))))(((((...)))))....)))......... ( -23.90)
>consensus
CCAGCUGGGCCCCAGGCCCACUUCGAUCCGAUGGGCAUUGCCGAGCACAACACCCACAACAACUAUGAUGGGUAGCAGCCUCUCCAGGCCCAGCUUGA
..(((((((((.....((((..((.....))))))..................(((((.......)).)))...............)))))))))... (-15.23 = -15.37 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:07 2006