Locus 6401

Sequence ID 2R_DroMel_CAF1
Location 20,020,410 – 20,020,505
Length 95
Max. P 0.737385
window10215

overview

Window 5

Location 20,020,410 – 20,020,505
Length 95
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 84.44
Mean single sequence MFE -38.82
Consensus MFE -23.97
Energy contribution -26.03
Covariance contribution 2.06
Combinations/Pair 1.20
Mean z-score -3.49
Structure conservation index 0.62
SVM decision value 0.44
SVM RNA-class probability 0.737385
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20020410 95 + 20766785
UCCGAGGAGGCCGUGGCGGUAGCGGCA-CUGCUGGCACGAACUGCCGCGGCCUGUCCAUUGGCCACCUCCUUCAUGAUCUCCUCCACCUUCUCCUU
...((((((..(((((((((((((((.-(....))).))..)))))))((((........))))........))))..))))))............ ( -39.90)
>DroPse_CAF1 39627 95 + 1
UCCGCCCCGGCCGUGGCGGUAGCUGCAGCUGCUG-CAGUCUUCGCCGAGGCCUGGCCAUUGGCCACCUCUUUCAUAAUCUCAUCCACCUUCUCCUU
........((((.((((((..(((((((...)))-))))..)))))).))))(((((...)))))............................... ( -36.30)
>DroEre_CAF1 43232 95 + 1
UCCGAGGAGGCCGUGGCUGUAGCGGCU-GUGCUGGCACGAACUGCCGCGGCCUGGCCAUUGGCCACCUCCUUCAUGAUCUCCUCGACCUUCUCCUU
..(((((((((((((((.((..(((((-.....))).)).)).)))))))))(((((...)))))..............))))))........... ( -42.60)
>DroYak_CAF1 42697 95 + 1
UCCGAGGAGGCCGUGGCGGUAGCGGCA-CUGCUAGCACGAACUGCCGCUGCCUGGCCAUUGGCCACCUCCUUCAUGAUCUCCUCGACCUUCUCCUU
..(((((((..(((((.((((((((((-...(......)...))))))))))(((((...)))))......)))))..)))))))........... ( -45.60)
>DroAna_CAF1 40771 95 + 1
UCUGAGGAGGCAGUGACUGUAGCUGCU-CUACUGGUAGCUACUGCCGUUGCCUGACCAUUGGCCACCUCCUUCAUGAUCUCCUCCACCUUCUCCUU
...(((((((..((((..(((((((((-.....)))))))))....((.(((........))).)).....))))..)))))))............ ( -32.20)
>DroPer_CAF1 40586 95 + 1
UCCGCCCCGGCCGUGGCGGUAGCUGCAGCUGCUG-CAGUCUUCGCCGAGGCCUGGCCAUUGGCCACCUCUUUCAUAAUCUCAUCCACCUUCUCCUU
........((((.((((((..(((((((...)))-))))..)))))).))))(((((...)))))............................... ( -36.30)
>consensus
UCCGAGGAGGCCGUGGCGGUAGCGGCA_CUGCUGGCACGAACUGCCGCGGCCUGGCCAUUGGCCACCUCCUUCAUGAUCUCCUCCACCUUCUCCUU
...((((((((((((((((((((.......)))).......)))))))))))(((((...)))))..............)))))............ (-23.97 = -26.03 +   2.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:05 2006