Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,216,128 – 3,216,236 |
Length | 108 |
Max. P | 0.554143 |
Location | 3,216,128 – 3,216,236 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 83.98 |
Mean single sequence MFE | -26.40 |
Consensus MFE | -18.84 |
Energy contribution | -18.90 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.38 |
Mean z-score | -1.91 |
Structure conservation index | 0.71 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.554143 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3216128 108 + 20766785 GGAGCUUUGGAAUGGACACAACAUCG---CUGUCUCCAAAGAGAUCUCUUAACAAUCGUACCAGUUCGUCUUGCUCUCCCAAUAGGAGCAAUACAUCUCCAAAGUCCUCGC (((.(((((((.((((.(((......---.))).))))((((....)))).................((.(((((((.......))))))).))...)))))))))).... ( -29.30) >DroSec_CAF1 7856 108 + 1 GAAGUUUUGGAAUGGACACAACAUCG---CUGUCUCCGAAGAGAUCUCUUAACAAUCUUACCAGUUCGUCUUGCUCUCCCAGUAGAAGCAAUACAUCUCCAAAGUCCUCGC ((.((((((((.((((.(((......---.))).))))((((....)))).................((.(((((((......)).))))).))...))))))).).)).. ( -20.10) >DroSim_CAF1 73 108 + 1 GGAGCUUUGGAAUGGACACAACAUCG---CUGUCUCCGAAGAGAUCUCUUAACAAUCUUACCAUUUCGUCUUGCUCUCCCAAUAGGAGCAAUACAUCUCCAAAGUCCUCGC (((.(((((((.((((.(((......---.))).))))((((....)))).................((.(((((((.......))))))).))...)))))))))).... ( -28.70) >DroEre_CAF1 4997 108 + 1 GGAGCUUUGGAAUGGACACAAGAUCG---CUGUCUCCAAAGAGAUUUCUUAACAAUCUUACCAGUUCGUCUUGUUCCCCCAAUAGGAGCAAUACAUCUCCAAGGUCCUCGC (((.(((((((.((((.(((......---.))).))))..((((((.......))))))........((.(((((((.......))))))).))...)))))))))).... ( -29.60) >DroYak_CAF1 4764 108 + 1 GGAGCUUUGGAAUCGAUACAACAUCG---CUGUCUCCAAAGAGAUCUCUUAACAAUCUUACCAGUUCGUCUUGCUCUCCCAAUAAGAGCAAUACAUCUCCAAAGUCCUCGC (((.(((((((..((((.....))))---..(((((....)))))......................((.(((((((.......))))))).))...)))))))))).... ( -26.80) >DroAna_CAF1 4569 111 + 1 GAAGAUCCGUAACGGAAACAAUGUCACUACUGCCUCCAAAUAGGUCUUUCAGCAGUCGCACCAGUUCAUCUUGCUCCCCCAAAAGGCACAGAAUGUUACCGUGAUCAUCAC ((.((((((((((((((....(((.(((.(((...((.....)).....))).))).)))....))).(((((((.........)))).))).))))).)).)))).)).. ( -23.90) >consensus GGAGCUUUGGAAUGGACACAACAUCG___CUGUCUCCAAAGAGAUCUCUUAACAAUCUUACCAGUUCGUCUUGCUCUCCCAAUAGGAGCAAUACAUCUCCAAAGUCCUCGC (((.(((((((....................(((((....)))))......................((.(((((((.......))))))).))...)))))))))).... (-18.84 = -18.90 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:25 2006