| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 20,009,522 – 20,009,633 |
| Length | 111 |
| Max. P | 0.778636 |
| Location | 20,009,522 – 20,009,633 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.41 |
| Mean single sequence MFE | -45.45 |
| Consensus MFE | -31.12 |
| Energy contribution | -32.68 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.778636 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20009522 111 - 20766785 ---------UACUAACCAAAGAUGGGUCUGCGCACCAACAACGCCAUUGUAAUCGGCGUGGAGAAGCGCUCCGUGGGCGACUUGCAGGAGGAGCGCAUGGUGCGCAAGAUUUGCAUGCUC ---------...........(.(..((((((((((((...(((((.........)))))......(((((((....((.....))....))))))).)))))))).))))..))...... ( -45.90) >DroSec_CAF1 26284 111 - 1 ---------UACCCACUAAAGGUGGGUCUGCGCACCAACAACGCCAUUGUGCUCGGCGUGGAGAAGCGUUCCGUGGGCGACCUGCAGGAGGAGCGCAUGGUGCGCAAGAUUUGCAUGCUC ---------.((((((.....)))))).(((((((((...(((((.........)))))......(((((((....((.....))....))))))).))))))))).............. ( -48.70) >DroSim_CAF1 26456 111 - 1 ---------UACCCACUAAAGAUGGGUCUGCGCACCAACAACGCCAUUGUGCUCGGCGUGGAGAAACGUUCCGUGGGCGACUUGCAGGAGGAGCGCAUGGUGCGCAAGAUUUGCAUGCUC ---------.((((((....).))))).(((((((((...(((((.........))))).......((((((....((.....))....))))))..))))))))).............. ( -40.40) >DroEre_CAF1 32225 111 - 1 ---------UCCCACCCACAGGUGGGUCUGCGCACCAACAACGCCAUUGUAAUCGGCGUGGAGAAGCGGUCCGCGGGCGAACUGCAGGAGGAGCGAGUGGUGCGCAAGAUCUGCCUGCUC ---------.........((((..(((((((((((((...(((((.........)))))......((..(((((((.....)))).)))...))...)))))))).)))))..))))... ( -51.60) >DroYak_CAF1 31621 120 - 1 CCUUCCACCUUCCACCCACAGGUGGGUCUGCGCACCAACAACGCCAUUGUAAUCGGCGUGGAGAAGCGCUCCGUGGGCGAUUUGCAGGAGGAGCGCAUAGUGCGCAAGAUUUGCAUGCUC ....((((((.........))))))((((((((((.....(((((.........)))))......(((((((....((.....))....)))))))...)))))).)))).......... ( -46.80) >DroMoj_CAF1 43519 111 - 1 ---------UCCACUGUGCAGGUGGGCUUGCGCACCAAGGACUCGAUUGUGCUGGGCGUGGAGAGGAAGGCGGUGGAUGUGCUGCAAGUGGAGCGAACGGCGCGUAAAAUUCGCAAACUG ---------(((((((((((((....))))))))(((.(.((......)).))))..))))).((....((((...((((((((...(.....)...)))))))).....))))...)). ( -39.30) >consensus _________UACCAACCAAAGGUGGGUCUGCGCACCAACAACGCCAUUGUAAUCGGCGUGGAGAAGCGCUCCGUGGGCGACCUGCAGGAGGAGCGCAUGGUGCGCAAGAUUUGCAUGCUC .....................((((((((((((((((...(((((.........))))).......((((((....((.....))....))))))..)))))))).))))))))...... (-31.12 = -32.68 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:01 2006