| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 20,003,026 – 20,003,117 |
| Length | 91 |
| Max. P | 0.722393 |
| Location | 20,003,026 – 20,003,117 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 75.19 |
| Mean single sequence MFE | -25.27 |
| Consensus MFE | -17.35 |
| Energy contribution | -17.38 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.722393 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20003026 91 + 20766785 ----------AUUCAUAU----UAUUCCUC-AUCCCCAGACGAGCGGAUUUGCGACGCCAUUGACGACCGGCGCAACUGUGUUUACAUCGUGGCUAGUCGCAAUCU ----------........----.(((((((-.((....)).))).))))((((((((((((.((.(...(((((....)))))..).)))))))..)))))))... ( -24.50) >DroSec_CAF1 19861 93 + 1 --------ACAUAUAUAU----UAUUUCUU-UCUCGCAGAUGAGCGGAUUUGCGACGCCAUUGACGACCGGCGCAACUGCGUUUACAUCGUGGCUAGUCGCAAUCU --------..........----........-((.(((......))))).((((((((((((.((.(...(((((....)))))..).)))))))..)))))))... ( -26.10) >DroEre_CAF1 25880 95 + 1 UAUG------AGAUAUAU----UAUUCCUU-UCCGGCAGAUGAGCGUAUUUGCGACGCCAUUGACGACCGGCGCAACUGCGUCUACAUCGUGGCUAGUCGCAAUCU ....------((((((.(----((((((..-...))..)))))..))))))((((((((((.((.(...(((((....)))))..).)))))))..)))))..... ( -26.80) >DroWil_CAF1 26956 92 + 1 ----------CCAUACAU----UAAGUCUCUACUUCUAGAUGAGCGCAUUUGCGAUGCGAUUGAUGAUCGUCGAAAUUGUGUGUAUCUCGUGGCUAGUCGCAAUCU ----------........----...((..(((((.(.(((((.(((((....((..((((((...))))))))....))))).))))).).)).)))..))..... ( -19.80) >DroYak_CAF1 25024 100 + 1 UAUAACAGA-AGAUAUAC----UAUUCCUU-UCCGCCAGAUGAGCGCAUUUGCGACGCCAUUGACGACCGACGCAACUGCGUCUACAUCGUGGCCAGUCGCAAUCU .........-((((....----........-..((((....).)))....(((((((((((.((.(...(((((....)))))..).)))))))..)))))))))) ( -27.10) >DroAna_CAF1 19176 102 + 1 UAGG----AAAUAAAUAUUGAAUAUUUUUAAUACCCUAGAUGAGCGCAUCUGCGAUGCCAUUGACGAUCGUCGCAAUUGUGUCUACAUUGUGGCCAAUCGCCACUU ((((----.......(((((((....))))))).))))((((((((((..(((((((...........)))))))..)))).)).))))(((((.....))))).. ( -27.30) >consensus __________AUAUAUAU____UAUUCCUU_UCCCCCAGAUGAGCGCAUUUGCGACGCCAUUGACGACCGGCGCAACUGCGUCUACAUCGUGGCUAGUCGCAAUCU .................................................((((((((((((.((.(...(((((....)))))..).)))))))..)))))))... (-17.35 = -17.38 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:55 2006