| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 20,002,904 – 20,003,020 |
| Length | 116 |
| Max. P | 0.534925 |
| Location | 20,002,904 – 20,003,020 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 84.71 |
| Mean single sequence MFE | -32.25 |
| Consensus MFE | -22.75 |
| Energy contribution | -24.53 |
| Covariance contribution | 1.78 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.534925 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20002904 116 - 20766785 AGUUCUGCUAAAUAGUACUUACGUUCUGCAAUCUCCGCCUUCUCUUGGAGGGCCUCCUUGUAGGCCUUUCGAUUGAAGGCGAUUUUCCGGGCCUUCUUCUCUUUGAGCGCCUUCUC .....(((..(((.((....)))))..))).....(((((((..(((((((((((......)))))))))))..))))))).......((((.(((........))).)))).... ( -39.10) >DroSec_CAF1 19726 116 - 1 AGUUCUGCUCCACAGUACUUACGUUCUGCAAUAUCCGCCUUCUCUUGGAGGGCCUCCUUGUAAGCCUUUCGAUUGAAGGCGAUUUUCCGGGCCUUCUUCUCUUUGAGCGCCUUCUC (((.(((.....))).)))................(((((((..(((((((((..........)))))))))..))))))).......((((.(((........))).)))).... ( -33.90) >DroSim_CAF1 19972 116 - 1 AGUUCUGCUCCACAGUACUUACGUUCUGCAAUAUCCGCCUUCUCUUGGAGGGACUCCUUGUAAGCCUUUCGAUUGAAGGCGAUUUUCCGGGCCUUCUUCUCUUUGAGCGCCUUCUC (((.(((.....))).)))................(((((((..((((((((.((.......))))))))))..))))))).......((((.(((........))).)))).... ( -32.00) >DroEre_CAF1 25744 116 - 1 AGUUUUAGUCCGCAGUACUUACGCUCUGCAAUCUCCGCCUUCUCCUGGAUGGCAUCCUUGUAAGCCUUUCGAUUGAAGGCUAUUUUCCGGGCCUUCUUCUCCUUUAGCGCCUUCUC .......((((((((..(....)..)))).......((((((...((((.(((..........))).))))...))))))........))))........................ ( -27.30) >DroYak_CAF1 24904 109 - 1 A-------UCCACGGUACUUACGUUCGGCAAUCUCCGCCUUCUCCUGGAGGGCAUCCUUGUAUGCCUUGCGAUUGAAGGCGAUCUUGCGGGCCUUCUUCUCCUUGAGCGCCUUCUC .-------....(((.((....)))))((((....(((((((...((.(((((((......))))))).))...)))))))...))))((((.(((........))).)))).... ( -35.00) >DroAna_CAF1 19045 116 - 1 AGUAUAGAUCUUAGUUACUCACGUUCUGCAAUCUCUGCCUUCUCUUCGACGGCAUCCUUGAGAGCUUUGCGAUAGAAGGCGAUCUUCCUGGCUUUCUUCUCCCUUGCCGCCUUCUC .....................(((...((..((((((((.((.....)).)))).....))))))...)))..((((((((.....)..(((.............)))))))))). ( -26.22) >consensus AGUUCUGCUCCACAGUACUUACGUUCUGCAAUCUCCGCCUUCUCUUGGAGGGCAUCCUUGUAAGCCUUUCGAUUGAAGGCGAUUUUCCGGGCCUUCUUCUCCUUGAGCGCCUUCUC ...................................(((((((..(((((((((..........)))))))))..))))))).......((((.(((........))).)))).... (-22.75 = -24.53 + 1.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:54 2006