| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 20,002,659 – 20,002,776 |
| Length | 117 |
| Max. P | 0.835694 |
| Location | 20,002,659 – 20,002,776 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 82.22 |
| Mean single sequence MFE | -51.87 |
| Consensus MFE | -36.80 |
| Energy contribution | -36.78 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.34 |
| Mean z-score | -2.37 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.835694 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20002659 117 - 20766785 UAUUCUUCGCGGUCUGCCUGGCCACCUCCUCCUCCUCGGUGGCGUGGCCGAAGGGCACCAGGGCCGCAGGACACAUCUCCUCAUCGGCCCUUUCCUGGGCACGGGCUGCCUCCGCUA ........((((...(((((((((((...........))))))...(((..((((....(((((((.((((......))))...))))))).)))).))).))))).....)))).. ( -52.90) >DroVir_CAF1 24807 116 - 1 CA-UUUUGACGAGCUGCUGUGCCUUCUCCUGCUCCUCAGUCACAUGGCCAAAUGGUAUCAAAAACUCUGGACACUGCUUCUCGUCCAGUUGCUGCUGGCGUCGAGCAUCCUCGGCAA ..-....((((((..((.(((((.....(((.....))).......(((....)))............)).))).))..))))))((((....))))..((((((....)))))).. ( -32.90) >DroSec_CAF1 19481 117 - 1 UAUUCUUAGCGGUCUGCUUGGCCACCUCCUCCUCCUCGGUGGCGUGGCCGAAGGGCACCAGGGCCGCAGGACACAGGUCCUCAUCGGCCCUUUCCUGGGUACGGGCUGCCUCCGCUA ......((((((.....((((((((..((.((.....)).)).)))))))).(((((..(((((((.(((((....)))))...)))))))..((((....)))).))))))))))) ( -56.70) >DroSim_CAF1 19727 117 - 1 CAUUCUUAGCGGUCUGCUUGGCCACCUCCUCCUCCUCGGUGGCGUGGCCGAAGGGCACCAGGGCCGCAGGACACAGGUCCUCAUCGGCCCUUUCCUGGGCACGGGCUGCCUCCGCUA ......((((((.....((((((((..((.((.....)).)).)))))))).(((((..(((((((.(((((....)))))...)))))))..((((....)))).))))))))))) ( -56.70) >DroEre_CAF1 25499 117 - 1 UGUUCUUGGCGGUCUGCUUGGCCACCUCCUCCUCCUCGGUGGCGUGGCCAAAGGGCACUAGGGCAGCAGGACACAACUCCUCAUCGGCCCGUUCCUGGGCACGGGCCGCCUCCGCUA ......(((((((((..((((((((..((.((.....)).)).)))))))).))))....((((.(.((((......)))))...(((((((.(....).))))))))))).))))) ( -54.40) >DroYak_CAF1 24659 117 - 1 UGUUCUUGGCGGUCUGCCUGGCCACCUCCUCCUCCUCGGUGGCGUGGCCAAAGGGCACCAAGGCAGCCGGACACAGCUCCUCGUCGGCCCUUUCCUGGGCGCGGGCUGCCUCCGCAA ........((((..(((((((((((..((.((.....)).)).))))))...)))))...(((((((((((......)))....((((((......)))).)))))))))))))).. ( -57.60) >consensus UAUUCUUGGCGGUCUGCUUGGCCACCUCCUCCUCCUCGGUGGCGUGGCCAAAGGGCACCAGGGCCGCAGGACACAGCUCCUCAUCGGCCCUUUCCUGGGCACGGGCUGCCUCCGCUA ........((((..(((((((((((..((.((.....)).)).))))))...)))))...((((.((.(((......)))...(((((((......)))).))))).)))))))).. (-36.80 = -36.78 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:53 2006