| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,999,684 – 19,999,788 |
| Length | 104 |
| Max. P | 0.806958 |
| Location | 19,999,684 – 19,999,788 |
|---|---|
| Length | 104 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 78.62 |
| Mean single sequence MFE | -25.73 |
| Consensus MFE | -18.05 |
| Energy contribution | -20.17 |
| Covariance contribution | 2.11 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.806958 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19999684 104 + 20766785 CAGGGCGAUACAUAAUUAAUAAAAUUUCUGAUGAUAUUUACCAAGGGGUGAAGUCACUUUCGGGCCAUCUAAACAU--UCGCAGAUAUCAGAGAAAAGUUUGAUUA ............(((((((.....(((((((((.......((..((((((....))))))..))...(((......--....)))))))))))).....))))))) ( -18.30) >DroSec_CAF1 16019 89 + 1 CAGGGCGAAACAUAGUUUAUUAAGGUUCGGAUGAUAUUUACCACGGGGUGAAGUCCACUUCGGGCCGUCUAAACAUUUUCGCAUAUAUC----------------- ....((((((.((.(((((....((((((((((...((((((....))))))...)).))))))))...))))))))))))).......----------------- ( -26.50) >DroSim_CAF1 16247 106 + 1 CAGGGCGAAACAUAGUUUAUUAAGGUCCGGAUGAUAUUUACCAGGGGGUGAAGUCCACUUCGGGCCAUCUAAACAUUUUCGCAUAUAUCAGAGAAAAGUUUGAUAA ....((((((.((.(((((....((((((((((...((((((....))))))...)).))))))))...)))))))))))))...(((((((......))))))). ( -32.40) >consensus CAGGGCGAAACAUAGUUUAUUAAGGUUCGGAUGAUAUUUACCAAGGGGUGAAGUCCACUUCGGGCCAUCUAAACAUUUUCGCAUAUAUCAGAGAAAAGUUUGAU_A ....((((((....(((((....((((((((.(((.((((((....)))))))))...))))))))...)))))..))))))........................ (-18.05 = -20.17 + 2.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:52 2006