Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 19,994,679 – 19,994,792 |
Length | 113 |
Max. P | 0.994848 |
Location | 19,994,679 – 19,994,792 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 91.83 |
Mean single sequence MFE | -40.26 |
Consensus MFE | -33.62 |
Energy contribution | -34.18 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.16 |
Mean z-score | -2.39 |
Structure conservation index | 0.84 |
SVM decision value | 2.52 |
SVM RNA-class probability | 0.994848 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19994679 113 + 20766785 CCAUGAGCAUGGGACUGGCCGGCAUGCCGAACAUGACAAACAAGAUUACCAAAAAGGUGAGCCAGCUGAACCGGGUGA--ACUGAGGAAGCCAGGUGGCCUGCUGGCCAAAAGGA ((((....))))...(((((((((.(((.................(((((.....)))))(((.(((...((.((...--.))..)).)))..)))))).)))))))))...... ( -40.90) >DroSec_CAF1 11180 113 + 1 CCAUGAGCAUGGGACUGGCCGGCAUGCCGAACAUGACAAACAAGAUUACCAAAAAGGUGAGCCAGCUGAACCGGGUGA--ACUGAGGAAGCCAGGUGGCCUGCUGGCCAAAAGGA ((((....))))...(((((((((.(((.................(((((.....)))))(((.(((...((.((...--.))..)).)))..)))))).)))))))))...... ( -40.90) >DroSim_CAF1 11348 113 + 1 CCAUGAGCAUGGGACUGGCCGGCAUGCCGAACAUGACAAACAAGAUUACCAAAAAGGUGAGCCAGCUGAACCGGGUGA--ACUGAGGAAGCCAGGUGGCCUGCUGGCCAGAAGGA ((((....))))..((((((((((.(((.................(((((.....)))))(((.(((...((.((...--.))..)).)))..)))))).))))))))))..... ( -44.20) >DroEre_CAF1 12706 113 + 1 CCAUGAGCAUGGGACUGGCCGGCAUGCCGAACAUGACAAACAAGAUUACCAAAAAGGUAAGUCAGCUGAACCGGGUGA--ACUGGGGAAGUCAGGUGGCCAGGUGGACAGCUGGC ((((....)))).....((((((.(((((....((..........(((((.....)))))((((.((((.((.((...--.)).))....)))).))))))..))).)))))))) ( -39.70) >DroYak_CAF1 12471 115 + 1 CCAUGAGCAUGGGACUGGCCGGCAUGCCGAACAUGACAAACAAGAUUACCAAAAAGGUGAGCCAGCUGAACCGGGUGCACACUGGACAAGUCAGGUGGUCAGAUGGUCAGGUGAC ((((....))))..((((((((....)))................(((((.....))))))))))((((.(((..((..((((.((....)).))))..))..)))))))..... ( -35.60) >consensus CCAUGAGCAUGGGACUGGCCGGCAUGCCGAACAUGACAAACAAGAUUACCAAAAAGGUGAGCCAGCUGAACCGGGUGA__ACUGAGGAAGCCAGGUGGCCUGCUGGCCAGAAGGA ((((....))))..((((((((((.(((.................(((((.....)))))(((.(((....(((.......)))....)))..)))))).))))))))))..... (-33.62 = -34.18 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:51 2006