Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,203,328 – 3,203,423 |
Length | 95 |
Max. P | 0.658368 |
Location | 3,203,328 – 3,203,423 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 73.45 |
Mean single sequence MFE | -24.37 |
Consensus MFE | -11.23 |
Energy contribution | -11.87 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.25 |
Mean z-score | -1.81 |
Structure conservation index | 0.46 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.658368 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3203328 95 - 20766785 -----ACUCGCGGCUACAGAUACAGAUA--CAGAUGCAUUCACGGUCUCAGAUAC------AGAUACACAUUGUAUCUGCCUGUAGAGUAUUUUGAACUCGUGUAAUC -----......(..((((..(((((...--((((((((......((((.......------))))......)))))))).)))))((((.......)))).))))..) ( -22.50) >DroVir_CAF1 16018 79 - 1 -------ACACGGCGACACACACA--CACACAGCCAGAGACACGCCC------AC------AGCUGCAC-UUGUAGC-------UGAGUAUUUUGAACUCGUGUAAUC -------(((((((..........--......))).(((........------.(------((((((..-..)))))-------))...........))))))).... ( -19.54) >DroSec_CAF1 10377 102 - 1 CCCGCACUCGCGGCUACAGAUACAGAUACACAGAUGCAUUCACGGUUUCAGAUAC------AGAUACACAUUGUAUCUGACUGUGGAGUAUUUUGAACUGGUGUAAUC .((((....)))).((((....(((...((.((((((.(((((((..((((((((------((.......)))))))))))))))))))))))))..))).))))... ( -32.20) >DroSim_CAF1 14315 102 - 1 CCCGCACUCGCGGCUACAGAUACAGAUACACAGAUGCAUUCACGGUCUCAGAUAC------AGAUACACAUUGUAUCUGACUGUGGAGUAUUUUGAACUCGUGUAAUC .((((....)))).............(((((((((((.(((((((((..((((((------((.......))))))))))))))))))))))).(....))))))... ( -32.00) >DroEre_CAF1 10780 87 - 1 -C------CGC------ACUCGCAGAUA--CAGAUACAUUUAUGGCCUCAGAUAC------AGAUACACAUUGUAUCUGGCAGUGGAGUAUUUUGAACUCGUGUAAUC -.------...------((.((.((...--.((((((.(((((.(((..((((((------((.......))))))))))).)))))))))))....)))).)).... ( -20.10) >DroYak_CAF1 10417 92 - 1 --------CGC------AGAUACAAAUG--CAGAUACAUUUACGGUCUCAGAUACAGAUACAGAUACACAUUGUAUCUGGCAGUGGAGUAUUUUGAACUCGUGUAAUC --------.((------(........))--)((((((.(((((.((((.......)))).(((((((.....)))))))...)))))))))))............... ( -19.90) >consensus _______UCGCGGCUACAGAUACAGAUA__CAGAUACAUUCACGGUCUCAGAUAC______AGAUACACAUUGUAUCUGACUGUGGAGUAUUUUGAACUCGUGUAAUC ...................((((.......((((((((......((((.............))))......))))))))......((((.......)))))))).... (-11.23 = -11.87 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:24 2006