Locus 6389

Sequence ID 2R_DroMel_CAF1
Location 19,979,478 – 19,979,573
Length 95
Max. P 0.951362
window10198 window10199

overview

Window 8

Location 19,979,478 – 19,979,573
Length 95
Sequences 4
Columns 96
Reading direction forward
Mean pairwise identity 92.70
Mean single sequence MFE -19.86
Consensus MFE -19.50
Energy contribution -19.44
Covariance contribution -0.06
Combinations/Pair 1.12
Mean z-score -1.82
Structure conservation index 0.98
SVM decision value 1.41
SVM RNA-class probability 0.951362
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19979478 95 + 20766785
GCCUUUGAUUUAAUACACGGCCUCGGAUGAGUAAAAAAUACA-CAAAUAUUAUAAAUUAAAAGGCCGUGCAAAUCAGUGGUUUCUAUUGUUAUUAC
(((.(((((((....((((((((..(((..((((........-......))))..)))...)))))))).))))))).)))............... ( -22.24)
>DroSec_CAF1 20490 96 + 1
GCCUUUGAUUUAAUACACGGCCUCGGAUGAAUAAAAAACACAGCAAAUAUUAUAAAUUAAAAGGCCGUGCAAAUCAGUGGUUUCUAUUGUUAUUAU
(((.(((((((....((((((((..(((..((((...............))))..)))...)))))))).))))))).)))............... ( -21.86)
>DroSim_CAF1 21176 96 + 1
GCCUUUGAUUUAAUUCACGGCCUCGGAUGAAUAAAAAACACAGCAAAUAUUAUAAAUUAAAAGGCCGUGCAAAUCAGUGGUUUCUAUUGUUAUUAC
(((.(((((((....((((((((..(((..((((...............))))..)))...)))))))).))))))).)))............... ( -21.86)
>DroEre_CAF1 20574 91 + 1
GCCUUUGAUUUAAUGCA--GCUUUGAAUGGAUAAAAAACA---CAAAUAUUAUAAAUUAAAAGGCCGUGCAAAUCAGUGGUUUCUAUUGUUAUUAC
(((.((((((...((((--(((((.(((..((((......---......))))..)))..)))))..)))))))))).)))............... ( -13.50)
>consensus
GCCUUUGAUUUAAUACACGGCCUCGGAUGAAUAAAAAACACA_CAAAUAUUAUAAAUUAAAAGGCCGUGCAAAUCAGUGGUUUCUAUUGUUAUUAC
(((.(((((((....((((((((..(((..((((...............))))..)))...)))))))).))))))).)))............... (-19.50 = -19.44 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 9

Location 19,979,478 – 19,979,573
Length 95
Sequences 4
Columns 96
Reading direction reverse
Mean pairwise identity 92.70
Mean single sequence MFE -19.33
Consensus MFE -17.50
Energy contribution -18.25
Covariance contribution 0.75
Combinations/Pair 1.13
Mean z-score -1.66
Structure conservation index 0.91
SVM decision value 0.69
SVM RNA-class probability 0.822787
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19979478 95 - 20766785
GUAAUAACAAUAGAAACCACUGAUUUGCACGGCCUUUUAAUUUAUAAUAUUUG-UGUAUUUUUUACUCAUCCGAGGCCGUGUAUUAAAUCAAAGGC
................((..((((((((((((((((...............((-.(((.....))).))...)))))))))))...)))))..)). ( -22.77)
>DroSec_CAF1 20490 96 - 1
AUAAUAACAAUAGAAACCACUGAUUUGCACGGCCUUUUAAUUUAUAAUAUUUGCUGUGUUUUUUAUUCAUCCGAGGCCGUGUAUUAAAUCAAAGGC
................((..((((((((((((((((......((.(((((.....)))))...)).......)))))))))))...)))))..)). ( -22.72)
>DroSim_CAF1 21176 96 - 1
GUAAUAACAAUAGAAACCACUGAUUUGCACGGCCUUUUAAUUUAUAAUAUUUGCUGUGUUUUUUAUUCAUCCGAGGCCGUGAAUUAAAUCAAAGGC
................((..((((((((((((((((......((.(((((.....)))))...)).......)))))))))...)))))))..)). ( -21.62)
>DroEre_CAF1 20574 91 - 1
GUAAUAACAAUAGAAACCACUGAUUUGCACGGCCUUUUAAUUUAUAAUAUUUG---UGUUUUUUAUCCAUUCAAAGC--UGCAUUAAAUCAAAGGC
................((..(((((((..((((.(((.(((..((((......---......))))..))).)))))--))...)))))))..)). ( -10.20)
>consensus
GUAAUAACAAUAGAAACCACUGAUUUGCACGGCCUUUUAAUUUAUAAUAUUUG_UGUGUUUUUUAUUCAUCCGAGGCCGUGUAUUAAAUCAAAGGC
................((..((((((((((((((((.........(((((.....)))))............))))))))))...))))))..)). (-17.50 = -18.25 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:49 2006