Locus 6388

Sequence ID 2R_DroMel_CAF1
Location 19,979,152 – 19,979,256
Length 104
Max. P 0.572718
window10197

overview

Window 7

Location 19,979,152 – 19,979,256
Length 104
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 70.18
Mean single sequence MFE -38.03
Consensus MFE -11.32
Energy contribution -13.07
Covariance contribution 1.75
Combinations/Pair 1.21
Mean z-score -1.98
Structure conservation index 0.30
SVM decision value 0.08
SVM RNA-class probability 0.572718
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19979152 104 + 20766785
CUUAGCCCGGUCG---GG-AUGUCCUUCAGCUGACGUCCUC-----GUUGGCGGCUGAGUGG----GGGCCAUUAAUGCAUCGGAUUAACCCAACCAUAUGCAGAUAUG---AGUAUAUC
........(((.(---((-..((((....((..(((....)-----))..)).((..(((((----...)))))...))...))))...))).)))((((((.......---.)))))). ( -32.40)
>DroSec_CAF1 20166 104 + 1
CUUGGCCCGGUCG---GG-UUGUCCUUCAGCUGACGUCCUC-----GUAGGCGGCUGAGUGG----CGGCCAUUAAAGCAUCGGACUAACCCGACCAUAUGCAUCUACG---GGUGUAUC
........(((((---((-((((((....(((.(((....)-----)).)))(((((.....----)))))...........)))).)))))))))..(((((((....---))))))). ( -47.30)
>DroSim_CAF1 20852 104 + 1
CUUGGCCCGGUCG---GG-AUGUCCUUCAGCUGACGUCCUC-----GUAGGCGGCUGAGUGG----CGGCCAUUAAUGCAUCGGAUUAACCCGACCAUAUGCAUCUACG---GGUGUAUC
........(((((---((-..((((....(((.(((....)-----)).)))(((((.....----)))))...........))))...)))))))..(((((((....---))))))). ( -42.80)
>DroEre_CAF1 20260 103 + 1
CUUGGCCCGCUCG---GG-AUGUCCUUCAGCUGACAUCCUUCAGCUGACGUCGCCUGAGUGG----AGGCCAUCAAUGCAGCGGAUCAGACCGACUAUAUGCAUAUAG---------AUG
..(((((((((((---((-.((.(..((((((((......)))))))).).)))))))))).----.)))))...(((((.(((......)))......)))))....---------... ( -41.40)
>DroYak_CAF1 20819 116 + 1
CCUGGCCCGCUCG---GGAAUGUCCUUCAGCCGACAUCCUUCAGCUGACGUGG-CUGAGUGGAGGGAGGCCAUUAAUGCAUCGAAUCAGCCCGACUAUAUGCAUAUAUAUCUACUAUAUC
..((((((.((((---(((.((((........))))))))((((((.....))-))))...))).).)))))...((((((....((.....))....))))))................ ( -34.70)
>DroAna_CAF1 19183 95 + 1
-----CGAGGUGAAGCUG-AUGCCCUUCAGUUGAUGUCCUC-----AUAAUCGGCUGAGUGG----AGGACAUUAAUGCAUCAGAUUAUGU-------UUGUAAGUCCC---UACAUAUA
-----..(((.((..(((-((((......((((((((((((-----....((....))...)----)))))))))))))))))).((((..-------..)))).))))---)....... ( -29.60)
>consensus
CUUGGCCCGGUCG___GG_AUGUCCUUCAGCUGACGUCCUC_____GUAGGCGGCUGAGUGG____AGGCCAUUAAUGCAUCGGAUUAACCCGACCAUAUGCAUAUACG___AGUAUAUC
..(((((................((((((((((.(..............).)))))))).)).....)))))....((((((((......)))).....))))................. (-11.32 = -13.07 +   1.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:47 2006