Locus 6387

Sequence ID 2R_DroMel_CAF1
Location 19,977,784 – 19,977,886
Length 102
Max. P 0.871286
window10196

overview

Window 6

Location 19,977,784 – 19,977,886
Length 102
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 74.33
Mean single sequence MFE -34.80
Consensus MFE -11.73
Energy contribution -13.62
Covariance contribution 1.89
Combinations/Pair 1.09
Mean z-score -2.43
Structure conservation index 0.34
SVM decision value 0.87
SVM RNA-class probability 0.871286
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19977784 102 + 20766785
UAA---------UAGCAUUAAUUAACUGAUGGCUCCG-GGCACAGCCCAUUCAGACACUCAACGACUGUCGAAAGGGGAUCCAGCCUGGGGGGCCUGGAAU--CGAUGGCAUUU
...---------...(((((......))))).(((((-(((....(((.....((((.((...)).)))).....))).....)))))))).(((......--....))).... ( -30.80)
>DroSec_CAF1 18852 102 + 1
UAA---------UGGCAUUAAUUAACUGAUGGCUCCG-GGCUCAGCCCAUUCAGACACUCAACGACCGUCGGAUGGGGACUCAGACUCGCGGGCCAGGAAU--UGAUGGCGUUU
.((---------((.((((((((......((((((((-((((.(((((((((.(((...........))))))))))..)).)).)))).))))))..)))--))))).)))). ( -38.40)
>DroSim_CAF1 19503 102 + 1
UAA---------UGGCAUUAAUUAACUGAUGGCUCCG-GGCUCAGCCCAUUCAGACACUCAACGACCGUCGGAUGGGGACUCAGCCUCGCGGGCCAGGAAU--UGAUGGCGUUU
.((---------((.((((((((......((((((((-((((.(((((((((.(((...........))))))))))..)).)))).)).))))))..)))--))))).)))). ( -41.40)
>DroEre_CAF1 18948 96 + 1
UAAUGGCAUUAAUGGCAUUAAUUAACUGAUGGCUCCGGGGCUCAGCCCAUUCAGACACUCAACGACUGUCGGCUGGAGAGCCAAC------------------UGAUGGCGUUU
.((((.(((((.((((((((......))))..(((((((((...)))).....((((.((...)).))))...))))).))))..------------------))))).)))). ( -28.40)
>DroYak_CAF1 19167 104 + 1
UAAUGCCAUUAAUGGCAUUAAUUAACUGAUGGCUCCACGACUCAGCCCAUUC-GACACUCAACGACUGUCGGAUGAGGAUUCAUC---G------AGGAUUCAUCAUCGCGCUC
((((((((....))))))))......(((((..(((.(((.....(((((((-((((.((...)).))))))))).)).....))---)------.)))..)))))........ ( -37.90)
>DroAna_CAF1 17992 97 + 1
UAA---------UGGCAUUAAUUAACUGAUGGCUUUGGGGCUCAACCAAUUUAGACACUCAACGAGUGUCGGCCAAGGAGUCAUG------CGACCAAAAU--UGAUGGCAUUU
.((---------((.((((((((..((..(((((((((.......))))....(((((((...)))))))))))).)).(((...------.)))...)))--))))).)))). ( -31.90)
>consensus
UAA_________UGGCAUUAAUUAACUGAUGGCUCCG_GGCUCAGCCCAUUCAGACACUCAACGACUGUCGGAUGGGGACUCAGC___G__GGCCAGGAAU__UGAUGGCGUUU
..............((.........((((..(((....)))))))(((((((.((((.((...)).)))))))))))...............................)).... (-11.73 = -13.62 +   1.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:46 2006