Locus 6384

Sequence ID 2R_DroMel_CAF1
Location 19,975,035 – 19,975,143
Length 108
Max. P 0.594197
window10191

overview

Window 1

Location 19,975,035 – 19,975,143
Length 108
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.99
Mean single sequence MFE -33.73
Consensus MFE -16.61
Energy contribution -17.64
Covariance contribution 1.03
Combinations/Pair 1.27
Mean z-score -2.07
Structure conservation index 0.49
SVM decision value 0.12
SVM RNA-class probability 0.594197
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19975035 108 - 20766785
AUUAGGAAGUACAUUU-CCAGACGUGCCGUGGACGAAGU--------CUCACACGG-GAAACUAAUGAUGUGGCCAU-UUGAGUGCACUCAAGUGGUCCGCAAGGUGUGCAAAGU-GGGU
....(((((....)))-)).(.((..((((((((...))--------).)))..((-....)).....(((((((((-(((((....))))))))).))))).))..))).....-.... ( -38.20)
>DroSec_CAF1 16097 108 - 1
AUUAGAAAGUACAUUU-CCAGACGUGCCGUGCACGAAGU--------UACAUACGC-AAAACUAAUGAUGUGGCCAU-UUGAGUGCAUCCAAGUGGUCCGCAAGGUGUGCAAAGU-GGGU
........((((((((-.....(((((...)))))....--------.........-...........(((((((((-(((........))))))).))))))))))))).....-.... ( -29.30)
>DroSim_CAF1 16730 108 - 1
AUUAGAAAGUACAUUU-CCAGACGUGCCGUGCACGAAGU--------UACACACGC-AAAACUAAUGAUGUGGCCAU-UUGAGUGCAUCCAAGUGGUCCGCAAGGUGUGCAAAGU-GGGU
...............(-(((..(((((...)))))....--------..(((((..-....(....).(((((((((-(((........))))))).)))))..))))).....)-))). ( -29.50)
>DroEre_CAF1 16159 107 - 1
AUUAGGAAGUACAUUU-CCAGACGUGCCGUGGACCGGGU--------CACACACGC-AAAACUAAUGAUGUGGCCAU--UGAGUGCACUCAAAUGGUCUGCAAGGUGUGCAAAGU-GAGU
....(((((....)))-)).(.((..(((..((((((((--------((((((...-........)).))))))).(--((((....))))).)))))..)..))..))).....-.... ( -34.20)
>DroYak_CAF1 16760 96 - 1
AUUAGGAAGUACAUUU-CCAGACGUGC--------------------CACACACGC-AAAACUAAUGAGGUGGCCAU-UUGAGUGCACUCAAAUGGUCCGCAAGGUGUGCAAAGU-GAGU
........((((((((-...(.((((.--------------------....)))))-............((((((((-(((((....))))))))).)))).)))))))).....-.... ( -30.90)
>DroAna_CAF1 15462 120 - 1
AUUAAGCAUCACAUUUUGCAUACGUGACUUGGCCAAAAUAAUAGAGGCACACAUGCCAACACUAAUGAUGUGGCCAAGUUGGUGGCCCUCAAAUGGCCCCAAAUGUCCGCAAAUGAGAGC
.....((.((.(((((.((..((((((((((((((...((.(((.((((....))))....))).))...))))))))))((.((((.......))))))..))))..))))))).)))) ( -40.30)
>consensus
AUUAGGAAGUACAUUU_CCAGACGUGCCGUGGACGAAGU________CACACACGC_AAAACUAAUGAUGUGGCCAU_UUGAGUGCACUCAAAUGGUCCGCAAGGUGUGCAAAGU_GAGU
........((((((((......((((.........................)))).............(((((((((.(((((....))))))))).))))))))))))).......... (-16.61 = -17.64 +   1.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:41 2006