Locus 6383

Sequence ID 2R_DroMel_CAF1
Location 19,974,333 – 19,974,424
Length 91
Max. P 0.589099
window10190

overview

Window 0

Location 19,974,333 – 19,974,424
Length 91
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 90.07
Mean single sequence MFE -26.64
Consensus MFE -22.50
Energy contribution -22.86
Covariance contribution 0.36
Combinations/Pair 1.11
Mean z-score -1.33
Structure conservation index 0.84
SVM decision value 0.11
SVM RNA-class probability 0.589099
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19974333 91 + 20766785
CACAGAAAAUCCUGCGUGAUACUGUGGAUGAGUUAGAGUUAAGCGAUAAUUCAUUUAGCCGCGUUCGGAGAAA-GGCACCGUGUCAACAGGU----------
..........((((..((((((..(((((((((((..(.....)..)))))))))))(((...(((...))).-)))...)))))).)))).---------- ( -26.70)
>DroSec_CAF1 15362 91 + 1
CACAGAAAAUCCUGCGUGAUACUGUGGAUGAGUUAGAGUUAAGCGAUAAUUCAUUUAGCCGCGUUCGGAGCAA-GGCACCGUGUCAACAGGU----------
..........((((..((((((..(((((((((((..(.....)..)))))))))))(((((.......))..-)))...)))))).)))).---------- ( -27.20)
>DroSim_CAF1 15994 90 + 1
CACAGAAAAUCCUGCGUGAUACUGUGGAUGAGUUAGAGUUAAGCGAUAAUUCAUUUAGCCGCGUUCGGAGCA--GGUACCGUGUCAACAGGU----------
..........((((..((((((..(((((((((((..(.....)..)))))))))))(((((.......)).--)))...)))))).)))).---------- ( -26.30)
>DroEre_CAF1 15467 92 + 1
CACAGAAAAUCCUGCGUGAUUCCGUGGACGAGCUAGAGUUAAGCGAUAAUUCAUUUAGCCGCGUUCGGAGAAAAGUCACCGUGUCAACAGGU----------
..........((((..((((.(...(((((.((((((((((.....))))))...))))..)))))((.((....)).))).)))).)))).---------- ( -21.00)
>DroYak_CAF1 15976 102 + 1
CACGGAAAAUCCUGCGUGAUUCGGUGGAUGAGUUAGAGCUAAGCGAUAAUUCAUUUAGCCGCGUUCGGAGAAAAGUCACCGUGUCAACAGGUGAAUGUGAAU
((((......((((..((((.((((((.(((((((..((...))..)))))))(((..(((....)))..)))..)))))).)))).))))....))))... ( -32.00)
>consensus
CACAGAAAAUCCUGCGUGAUACUGUGGAUGAGUUAGAGUUAAGCGAUAAUUCAUUUAGCCGCGUUCGGAGAAA_GGCACCGUGUCAACAGGU__________
..........((((..((((((.((((((((((((..((...))..))))))))....))))....((.((....)).)))))))).))))........... (-22.50 = -22.86 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:40 2006