Locus 6380

Sequence ID 2R_DroMel_CAF1
Location 19,966,132 – 19,966,229
Length 97
Max. P 0.582626
window10186

overview

Window 6

Location 19,966,132 – 19,966,229
Length 97
Sequences 3
Columns 101
Reading direction reverse
Mean pairwise identity 92.74
Mean single sequence MFE -28.23
Consensus MFE -24.01
Energy contribution -24.23
Covariance contribution 0.23
Combinations/Pair 1.07
Mean z-score -1.95
Structure conservation index 0.85
SVM decision value 0.10
SVM RNA-class probability 0.582626
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19966132 97 - 20766785
CACGGAG----ACGGCAGUCCUGGGAAAACAGAUCAGAAGCAUGCUCGUAGUUGCUACACAAUUGUGAAAGCAAAUAUUCUCAAAUAAUUGGCAGCAUGCA
..((...----.))...(..(((......)))..)....(((((((.((..(((((.(((....)))..))))).......(((....)))))))))))). ( -25.20)
>DroSec_CAF1 7254 101 - 1
CAGGACGACGGACGGCAGUCCUGGGAAAACAGAUCACAAGCAUGCUCGUAGUUGCUACACACUUGUGAAAGCAAAUAUUCCCAAAUAAUUGGCAGCAUGCA
((((((..(.....)..))))))................(((((((.(((.(((((.(((....)))..))))).)))..((((....)))).))))))). ( -29.60)
>DroSim_CAF1 7238 101 - 1
CAGGGCGACGGACGGCAGUCCUGGGAAAACAGAGCACAAGCAUGCUCGUAGUUGCUACACACUUGUGAAAGCAAAUAUUCCCAAAUAAUUGGCAGCAUGCA
....((..(((((....))))((((((....(((((......)))))....(((((.(((....)))..)))))...))))))........)..))..... ( -29.90)
>consensus
CAGGGCGACGGACGGCAGUCCUGGGAAAACAGAUCACAAGCAUGCUCGUAGUUGCUACACACUUGUGAAAGCAAAUAUUCCCAAAUAAUUGGCAGCAUGCA
((((((...........))))))................(((((((.(((.(((((.(((....)))..))))).)))..((((....)))).))))))). (-24.01 = -24.23 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:36 2006