Locus 6377

Sequence ID 2R_DroMel_CAF1
Location 19,962,058 – 19,962,148
Length 90
Max. P 0.665040
window10181

overview

Window 1

Location 19,962,058 – 19,962,148
Length 90
Sequences 3
Columns 90
Reading direction reverse
Mean pairwise identity 93.33
Mean single sequence MFE -20.90
Consensus MFE -20.69
Energy contribution -20.47
Covariance contribution -0.22
Combinations/Pair 1.05
Mean z-score -1.40
Structure conservation index 0.99
SVM decision value 0.28
SVM RNA-class probability 0.665040
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19962058 90 - 20766785
ACUAUUUGCACUUGAGACACAGUUACCUCGCCAUCCUGGCAACAAAGUUUUAGUCUUAUCACACAGGUGAAACCCCCAAGCGCAGGUGCA
..(((((((.((((((((...(......)(((.....)))............))))..((((....))))......)))).))))))).. ( -21.40)
>DroSec_CAF1 3234 90 - 1
ACGAUUUGCACUUGAGACGCAGUUACCUCGCCAUCCUGGCAACAACGUUUUAGUCUUAUUACACAGGUGAAACCUUCAAGCACAGGUGCA
......((((((((((((...(((.....(((.....)))...)))......))))........(((.....))).......)))))))) ( -19.90)
>DroSim_CAF1 3230 89 - 1
ACAAUUUGCACUUGAGACGCAGUUACCUCGCCAUCCUGGCAACAACCUUUUAGUCUUAUCACACAGGUGAAACC-CCAAGCACAGGUGCA
......(((((((((((((.((....)))(((.....)))............))))..((((....))))....-.......)))))))) ( -21.40)
>consensus
ACAAUUUGCACUUGAGACGCAGUUACCUCGCCAUCCUGGCAACAACGUUUUAGUCUUAUCACACAGGUGAAACC_CCAAGCACAGGUGCA
......((((((((((((...(......)(((.....)))............))))..((((....))))............)))))))) (-20.69 = -20.47 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:31 2006