Locus 6376

Sequence ID 2R_DroMel_CAF1
Location 19,961,672 – 19,961,773
Length 101
Max. P 0.601588
window10180

overview

Window 0

Location 19,961,672 – 19,961,773
Length 101
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 77.33
Mean single sequence MFE -34.62
Consensus MFE -23.20
Energy contribution -23.07
Covariance contribution -0.13
Combinations/Pair 1.38
Mean z-score -1.18
Structure conservation index 0.67
SVM decision value 0.14
SVM RNA-class probability 0.601588
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19961672 101 + 20766785
GAGUGCGAGUGCGAUUGCGAUUGCGAUGCCGAUUUGAUUGGCGGUUUUGGGCGCCAGUCCUGGCGGGUUACCCCAACG-UGGUCUCCUUGCCCACUCGGGCG
..((.((((((.(...(.(((..((..((((....((((((((.(....).)))))))).))))(((....)))..))-..))).)....).)))))).)). ( -43.00)
>DroSec_CAF1 2858 83 + 1
------------------GAUUGCGAUGCCGAUUUGAUUGGCGGUUUUGGGCGCCUGUCCUGGCGGGUUACCCCAACG-UGGUCUCUUUGCCCACUCGGGCG
------------------(((..((.(((((((...)))))))...(((((.((((((....))))))...)))))))-..))).....((((....)))). ( -36.50)
>DroSim_CAF1 2854 83 + 1
------------------GAUUGCGAUGCCGAUUUGAUUGGCGGUUUUGGGCGCCUGUCCUGGCGGGUUACCCCAACG-UGGUCUCUUUGCCCACUCGGGCG
------------------(((..((.(((((((...)))))))...(((((.((((((....))))))...)))))))-..))).....((((....)))). ( -36.50)
>DroEre_CAF1 2832 88 + 1
G------------AUUGCGAUUGCGAUGCCGAUUUGAUUGGCGGUUUUGGGCGGCUGUCCUGGCGGACCACCCCAA-G-UGGUCUCUUUGCCCACCCGGGCG
.------------.....(((..(..(((((((...)))))))...(((((.((((((....)))).))..)))))-)-..))).....((((....)))). ( -33.30)
>DroYak_CAF1 2848 90 + 1
G-----------GAGUGCAGUUGCGAUGCCGAUUUGAUUGGCGGUUUUGGGCGCCUGUCCUGGCGGGUUACCCCAACG-UGGUCCCUUUGCCUACUCGGGCG
(-----------((.(((.((((...(((((((...))))))).....(((.((((((....))))))..))))))))-)).)))....((((....)))). ( -32.50)
>DroPer_CAF1 18943 88 + 1
G------------GU-G-AAUUCUGAUAUCGAUUUGAUUGGCGGUUUUCGGUACCCGCUCCUGUGGCUUUUCCAGUCGUUGGUCAGAUUGCUUAGUCAUGCG
.------------((-(-(...((((...(((((((((..(((..(...((...((((....)))).....)))..)))..))))))))).))))))))... ( -25.90)
>consensus
G____________AU_G_GAUUGCGAUGCCGAUUUGAUUGGCGGUUUUGGGCGCCUGUCCUGGCGGGUUACCCCAACG_UGGUCUCUUUGCCCACUCGGGCG
........................(((((((((...))))))....(((((.((((((....))))))...))))).....))).....((((....)))). (-23.20 = -23.07 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:30 2006