| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,958,202 – 19,958,309 |
| Length | 107 |
| Max. P | 0.500000 |
| Location | 19,958,202 – 19,958,309 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 95.42 |
| Mean single sequence MFE | -22.16 |
| Consensus MFE | -17.92 |
| Energy contribution | -18.04 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.81 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19958202 107 + 20766785 UCCAUUUCCAUAACCGUAAAUUGCCGCAUUUCGCCGUCACAAAAGGUGUUCAUAUACCAACAAGGAUCAAACCAUGGAUUUGCCUCUUCCGCGCGCAAUUCGCAAUU ...............(..(((((((((.................(((((....))))).....(((.(((((....).)))).....)))))).))))))..).... ( -22.80) >DroSec_CAF1 41248 107 + 1 UCCAUUUCCAUAACCGUAAAUUGCCGCAUUUCGCCGUCACAAAAGGUGUUCAUAUACCAACAAGGAUCAAACCAUGGAUUUGCCUCUUCCGCGCGCAAUUCGCCAUU ...............(..(((((((((.................(((((....))))).....(((.(((((....).)))).....)))))).))))))..).... ( -21.90) >DroSim_CAF1 43518 107 + 1 UCCAUUUCCAUAACCGUAAAUUGCCGCAUUUCGCCGUCACAAAAGGUGUUCAUAUACCAACAAGGAUCAAACCAUGGAUUUGCCUCUUCCGCGCGCAAUUCGCCAUU ...............(..(((((((((.................(((((....))))).....(((.(((((....).)))).....)))))).))))))..).... ( -21.90) >DroEre_CAF1 40139 107 + 1 UCCAUUUCCAUAACCGUAAAUUGCCGCAUUUUGCCGUCACAAAAGGUGUUCAUAUACCAACGAGGAUCAAACCACGGAUUUGCCUCUUCCGCGCGCAUUUUGCCAUU ...............(((((.((((((.(((((......)))))(((((....)))))...((((..(((((....).))))))))....))).))).))))).... ( -25.20) >DroYak_CAF1 39100 107 + 1 UCCAUUUCCAUAACCGUAAAUUGGCGUAUUUGGCCGUCACAAAAGGUGUUCAUAUACCAACAAGGAUCAAACCACGGAUUUGCCUCUUUCACUCGCAAUUCGCCAUU .....................(((((.......((((.......(((((....))))).....((......))))))..((((...........))))..))))).. ( -19.00) >consensus UCCAUUUCCAUAACCGUAAAUUGCCGCAUUUCGCCGUCACAAAAGGUGUUCAUAUACCAACAAGGAUCAAACCAUGGAUUUGCCUCUUCCGCGCGCAAUUCGCCAUU ...............((.(((((((((.................(((((....))))).....(((.(((((....).)))).....)))))).)))))).)).... (-17.92 = -18.04 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:29 2006