| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,955,351 – 19,955,462 |
| Length | 111 |
| Max. P | 0.827840 |
| Location | 19,955,351 – 19,955,462 |
|---|---|
| Length | 111 |
| Sequences | 3 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 85.92 |
| Mean single sequence MFE | -26.87 |
| Consensus MFE | -19.40 |
| Energy contribution | -19.40 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.54 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.827840 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19955351 111 + 20766785 ACCGAGAAGAAAGAAAAGGGCAGCUUAUUUCUGCUGUCACUGUCUCUGCUCCUGACUCGAGUUCCAUUUGAGCCUUGGCCCGUCUCUUAUCCUUUUCUUU----UUCCCAUUCUC ...(((((((((((((((((((((........)))))).........(((...(.(((((((...))))))).)..)))............)))))))))----).....))))) ( -28.80) >DroEre_CAF1 37271 99 + 1 GCCGAGAAGAA---A-AGGGCAGCUUAUUUCUGCUGUCACUGUCUCUGCUCCUGACUCGAGUUCCAUUUGAGCCU------------UAUCCUUUUCUUUCCUCUGCCCGUUCUC ((.((((((((---(-((((((((........)))))).................(((((((...)))))))...------------....))))))))..))).))........ ( -25.80) >DroYak_CAF1 36265 111 + 1 ACCGAGAAGAA---A-AGGGCAGCUUAUUUCUGCUGUCACUGUCUCUGCUCCUGACUCGAGUUCCAUUUGAGCCUUGGCCCGUCUCUUAUCCUUUUCUUUCCUCCUCCCAUUCUC ...(..(((((---(-((((((((........)))))).........(((...(.(((((((...))))))).)..)))............))))))))..)............. ( -26.00) >consensus ACCGAGAAGAA___A_AGGGCAGCUUAUUUCUGCUGUCACUGUCUCUGCUCCUGACUCGAGUUCCAUUUGAGCCUUGGCCCGUCUCUUAUCCUUUUCUUUCCUCUUCCCAUUCUC ...((((((.......((((((((........)))))).))..............(((((((...)))))))...................)))))).................. (-19.40 = -19.40 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:28 2006