| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,954,719 – 19,954,822 |
| Length | 103 |
| Max. P | 0.618424 |
| Location | 19,954,719 – 19,954,822 |
|---|---|
| Length | 103 |
| Sequences | 4 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 89.64 |
| Mean single sequence MFE | -33.52 |
| Consensus MFE | -28.58 |
| Energy contribution | -29.33 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.618424 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19954719 103 + 20766785 UAAUUCGCUUGGCUAUCGCUUGCCAGUCGUGGUCGUAUAUUUAUAUAGCCCCGUGCUCUCUGGUCGCAGUUUGGAG-------CUCCCAGCUCAGAGUUCCAAGCUCCCA--------- .........(((.....((..(((((.((.(((..(((....)))..))).))......))))).))(((((((((-------(((........)))))))))))).)))--------- ( -32.20) >DroSec_CAF1 37690 103 + 1 CAAUUCGCUUGGCUAUCGCUUGCCAGUCGUGGUCGUAUAUUUAUAUAGCCCCGUGCUCUCUGGUCGCAGUUCGGAG-------CUCCCAGCUCAGAGUUCCAAGCUCCCA--------- ......((((((...((((..(((((.((.(((..(((....)))..))).))......))))).))......(((-------(.....)))).))...)))))).....--------- ( -31.30) >DroSim_CAF1 39969 103 + 1 CAAUUCGCUUGGCUAUCGCUUGCCAGUCGUGGUCGUAUAUUUAUAUAGCCCCGUGCUCUCUGGUCGCAGUUUGGAG-------CUCCCAGCUCAGAGUUCCAAGCUCCCA--------- .........(((.....((..(((((.((.(((..(((....)))..))).))......))))).))(((((((((-------(((........)))))))))))).)))--------- ( -32.20) >DroYak_CAF1 35579 119 + 1 CAAUUCGCUUGGCUAUCGCUUGCCAGUCGUGGUCGUAUAUUUAUAUAGCCCCGUGCUCUCUGCUCGCAGUUUGCAGUUCCGAGCUCGGAGCUCAGGGUUCCAAGCUCCCAGCUCCUGGC ..........(((....))).(((((.((.(((..(((....)))..))).))(((...(((....)))...))).....(((((.((((((...(....).)))))).)))))))))) ( -38.40) >consensus CAAUUCGCUUGGCUAUCGCUUGCCAGUCGUGGUCGUAUAUUUAUAUAGCCCCGUGCUCUCUGGUCGCAGUUUGGAG_______CUCCCAGCUCAGAGUUCCAAGCUCCCA_________ ......((((((...((((..(((((.((.(((..(((....)))..))).))......))))).))((((.(((((.....))))).))))..))...)))))).............. (-28.58 = -29.33 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:27 2006