| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,952,915 – 19,953,021 |
| Length | 106 |
| Max. P | 0.899415 |
| Location | 19,952,915 – 19,953,021 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 86.92 |
| Mean single sequence MFE | -41.14 |
| Consensus MFE | -31.30 |
| Energy contribution | -31.34 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.76 |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.899415 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19952915 106 - 20766785 AAUUCCGCGAAAUAUGUCUUGGCAGUGCUUCCAACUGGGUCAUCGCGGGCUUC-----------CAAGCCGGAUGACUCGCUUUAAUGUGAGUCCCGGGGA---CACCUGAAGUCCAGGU ...(((((((....((.((..(...((....)).)..)).)))))))))..((-----------(...((((..(((((((......))))))))))))))---.(((((.....))))) ( -38.20) >DroSec_CAF1 35914 106 - 1 AAUUCCGCGAAAUAUGUCUUGGCAGUGCGUCCAACUAGGUCAUCGCGGGCUUC-----------CAAGCCGGAUGACUCGCUUUAAUGUGAGUCCCGGGGA---CACCUGAAGUCCAGGU ...(((((((....(((....)))....(.((.....)).).)))))))..((-----------(...((((..(((((((......))))))))))))))---.(((((.....))))) ( -38.70) >DroSim_CAF1 38207 106 - 1 AAUUCCGCGAAAUAUGUCUUGGCAGUGCGUCCAACUGGGUCAUCGCGGGCUUC-----------CAAGCCGGAUGACUCGCUUUAAUGUGAGUCCCGGGGA---CACCUGAAGUCCAGGU ......(((.....(((....))).)))((((..((((((((((.(((.((..-----------..))))))))))(((((......))))).))))))))---)(((((.....))))) ( -38.90) >DroEre_CAF1 34922 117 - 1 AAUUCCGCGAAAUAUGCCUUGGCAGCGCACCCAAGUGGGUCAUCCCGUGCUUUCGCUUCCGCUUCGCGCUGGAUGACUCGCUUUAAUGCGAGUUCCGGGGA---CACCUGAAGUCCAGAU ....(((.(((...(((....))).((((...(((((((((((((.((((....((....))...)))).)))))))))))))...))))..))))))(((---(.......)))).... ( -47.60) >DroYak_CAF1 33771 109 - 1 AAUUCCGCGAAAUAUGUCUUGGCAGCGAACCCAACUGGGUCAUCGCAUGCUUC-----------CAAGCUGGAUGACUCGCUUUAAUGUGAGUUCCGUGGAACUCACCUGGAGUCCAGGU ..(((((((...........((((((((((((....))))..)))).))))((-----------(.....))).(((((((......))))))).)))))))...((((((...)))))) ( -42.30) >consensus AAUUCCGCGAAAUAUGUCUUGGCAGUGCAUCCAACUGGGUCAUCGCGGGCUUC___________CAAGCCGGAUGACUCGCUUUAAUGUGAGUCCCGGGGA___CACCUGAAGUCCAGGU ....((((((....(((....))).....(((....)))...))))(((((((...............((((..(((((((......)))))))))))((......)).))))))).)). (-31.30 = -31.34 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:25 2006