Locus 6370

Sequence ID 2R_DroMel_CAF1
Location 19,952,339 – 19,952,430
Length 91
Max. P 0.895305
window10174

overview

Window 4

Location 19,952,339 – 19,952,430
Length 91
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 94.87
Mean single sequence MFE -22.87
Consensus MFE -20.16
Energy contribution -20.22
Covariance contribution 0.06
Combinations/Pair 1.08
Mean z-score -1.68
Structure conservation index 0.88
SVM decision value 0.99
SVM RNA-class probability 0.895305
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19952339 91 - 20766785
UCAUAUUUUAUCGCGUAUGGCC-UCUCCAUUGACAACUUCCUGGCCAUAAAAGCCAACUGAGUGCACUUC---GCCAACAAAGUCGGUGCGAUGA
.......(((((((.(((((((-...................)))))))...(((.(((..((((.....---))..))..))).)))))))))) ( -24.91)
>DroSec_CAF1 35360 91 - 1
UCAUAUUUUAUCGCGUAUGGCC-UCUCCAUUGACAACUUCCUGGCCAUAAAAACCAACUGAGUGCACUUC---GCCAACAAAGUCGGUGCGAUGA
.......(((((((.(((((((-...................)))))))...(((.(((..((((.....---))..))..))).)))))))))) ( -24.61)
>DroSim_CAF1 37643 91 - 1
UCAUAUUUUAUCGCGUAUGGCC-UCUCCAUUGACAACUUCCUGGCCAUAAAAACCAACUGAGUGCACUUC---GCCAACAAAGUCGGUGCGAUGA
.......(((((((.(((((((-...................)))))))...(((.(((..((((.....---))..))..))).)))))))))) ( -24.61)
>DroEre_CAF1 34365 91 - 1
UCAUAUUUUAUCGCGUAUGGGC-UCUCCAUUGACAACUUCCUGCCCAUAAAAGCCAACUGAGUGCACUUC---GCCAACAAAGUCGGUGCGAUGA
.......(((((((.(((((((-...................)))))))...(((.(((..((((.....---))..))..))).)))))))))) ( -24.91)
>DroYak_CAF1 33197 91 - 1
UCAUAUUUUAUCGCGUAUGGGC-UCUCCAUUGACAACUUCCUGGCCAUAAAAACCAACUGAGUGCACUUC---GCCAACAAAGUCGGUGCGAUGA
.......(((((((.(((((.(-...................).)))))...(((.(((..((((.....---))..))..))).)))))))))) ( -20.01)
>DroAna_CAF1 34768 95 - 1
UCAUAUUUUAUCGCGUAUGGCCUUCUAUAUUGACAACUUCCUGGCCAUAAAAACCAACAAAGUGCACUCCGGGGCCAACAAAGUCGGUGCAAUGA
((((...........(((((((....................))))))).............((((((....(((.......))))))))))))) ( -18.15)
>consensus
UCAUAUUUUAUCGCGUAUGGCC_UCUCCAUUGACAACUUCCUGGCCAUAAAAACCAACUGAGUGCACUUC___GCCAACAAAGUCGGUGCGAUGA
.......(((((((.(((((((.((......)).........)))))))...(((.(((..((((........))..))..))).)))))))))) (-20.16 = -20.22 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:24 2006