| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,197,602 – 3,197,697 |
| Length | 95 |
| Max. P | 0.975323 |
| Location | 3,197,602 – 3,197,697 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 76.81 |
| Mean single sequence MFE | -25.67 |
| Consensus MFE | -11.04 |
| Energy contribution | -11.82 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.85 |
| Structure conservation index | 0.43 |
| SVM decision value | 1.75 |
| SVM RNA-class probability | 0.975323 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3197602 95 + 20766785 CCUUGGGCCA------UCUGCUUAAACUUAAUCUCGCAUUUAACACUCUUGUUGAAUGUGAGUUUUGAUGGGGCUACAUUUCCAGGCGUCAACCCGAUGAC .((((((...------...((((....((((.(((((((((((((....)))))))))))))..))))..))))......))))))((((.....)))).. ( -28.50) >DroPse_CAF1 5176 89 + 1 ACUUUGGGCAGGCCUGCCUGCCU--GCUUAAUCUCGCUUUUAACACUUUUGCUUAAUGUGAAUUUUGAUGC--CUAGAUUUUGAGGCGUCAAC-------- ...((((((((((......))))--))))))..((((..((((((....)).)))).))))...(((((((--((........))))))))).-------- ( -29.60) >DroSec_CAF1 4805 94 + 1 CCUUUGGCCA-------CUGCUUAAACUUAAUCUCGCAUUUAACACUCUUGUUGAAUGUGAGUUUUGAUGGGACUACACUUCCAGGCGUCAACCCGAUGAC ......(((.-------..........((((.(((((((((((((....)))))))))))))..))))(((((......))))))))((((......)))) ( -27.20) >DroEre_CAF1 4739 92 + 1 CCUUUG-CCA------UCUGCUUAAACAUAAUCUCGCAUUUAACACUCUUGUUGAAUGUGAGUUUUGAUAG--CUGCACUUCCAGGCGUAAACCCGAUGAC ......-.((------((.(((....((....(((((((((((((....)))))))))))))...))..))--)(((.((....)).))).....)))).. ( -23.70) >DroYak_CAF1 4948 84 + 1 CCUUUG-CCA------UCUGCUUAAACUUAAUCUCGCAUUUAACACUCUGGUUGAAUGUGAGUUUUGAUAG--UCACACUUCCAGGCGUCAAC-------- .....(-((.------................((((((((((((......))))))))))))...((..((--.....))..)))))......-------- ( -20.30) >DroPer_CAF1 5199 89 + 1 ACUUUGGGCAGGCCUGCCUGCCU--GCUUAAUCUCGCGUUUAACACUUUUGCUUAAUGUGAAUUUUGAUGC--CUAGAUUUUGAGUCGUCAAC-------- ...((((((((((......))))--))))))..(((((((...((....))...)))))))...((((((.--((........)).)))))).-------- ( -24.70) >consensus CCUUUGGCCA______UCUGCUUAAACUUAAUCUCGCAUUUAACACUCUUGUUGAAUGUGAGUUUUGAUGG__CUACACUUCCAGGCGUCAAC________ ...................((((.........((((((((((((......))))))))))))....((............)).)))).............. (-11.04 = -11.82 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:22 2006